Rw2G005850

O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000432
Physical Location & Seq
Forward (+)
5617619 .. 5619736
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005850.1

Sequence Viewer

Length: 750 bp
ATGTACTTACCAAAGGAGTTTCCAGAAAGGCCAATGGAAAACACTAGAAATCAAGTGAGTACCAAGAATCCAACTCTGTTGCAGAGTGAGGAGTTACATGAGTATATACTGAAGACTGGCGTCTACCCAAGAGAACCAAATCCTCTCAAGGAACTGAGGATTGCTACTGCAAATCACCCTATGGCTTTCATGGGTTCTGCACCTGATGCAGGTCAGTTAATGGCTATGCTCTTGAAACTAGTGAATCCCAAAAATACAATTGAAATCGGTGTTTTTACCGGATACTCTCTTCTCCTCACTGCTCTCACGATTCCTGATTATGGCAAGATTACAGCCATAGACATAAACCGGAAAGCATATGAAATAGGCTTTCCAATCATCAAAAAAGCCGGTGTAGAGCACAAAATTGACTTCATTGAGTCCCCAGCTCTGCCTATTCTTGACAAACTTTTGGAAAATCCAGAGAAGGAAGGGAGTTTCGACTTTGCTTTTGTTGATGCGGACAAGAATAACTACTGGAACTACCACAAGAGGCTAATGAAGCTGGTTAAGATTGGTGGGATGGTTATCTATGATAACACACTTTGGGGAGGGTCAGTTGCTCTGCGTGAAGAAGATGTTCCAGAGGCCAAAAGGGAATGGAGGCAATATGCAATCGAGTTTAACAAATTTATTTCGGTTGACCCTCGTGTCGAAATGTCCCAAGTTCCTTTGGGTGATGGAATCACAATTTGCAGGCGCGTTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

249

Amino Acids

28.36

Weight (kDa)

6.15

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 45 - 248 2e-75 O-methyltransferase
Methyltransf_24 PF13578 87 - 193 1.3e-08 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 689
Acc36I ACCTGC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 123
AccII CGCG 1 cut(s) 741
AciI CCGC 1 cut(s) 500
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 2 cut(s) 5, 61
AfiI CCNNNNNNNGG 2 cut(s) 209, 320
AgsI TTSAA 2 cut(s) 235, 263
AhlI ACTAGT 1 cut(s) 238
AluBI AGCT 2 cut(s) 428, 544
AluI AGCT 2 cut(s) 428, 544
Alw21I GWGCWC 1 cut(s) 402
AoxI GGCC 2 cut(s) 29, 627
ApoI RAATTY 1 cut(s) 668
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
Asp700I GAANNNNTTC 1 cut(s) 618
AspLEI GCGC 1 cut(s) 741
AsuHPI GGTGA 2 cut(s) 167, 728
BauI CACGAG 1 cut(s) 687
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 402
BccI CCATC 2 cut(s) 556, 713
BciVI GTATCC 1 cut(s) 275
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 2 cut(s) 45, 239
BfuAI ACCTGC 1 cut(s) 200
BfuI GTATCC 1 cut(s) 275
BmsI GCATC 2 cut(s) 196, 487
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 120
BsaWI WCCGGW 2 cut(s) 278, 348
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 320
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 121, 521
Bse8I GATNNNNATC 1 cut(s) 566
BseGI GGATG 1 cut(s) 567
BseJI GATNNNNATC 1 cut(s) 566
BseLI CCNNNNNNNGG 2 cut(s) 209, 320
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 121, 521
BseRI GAGGAG 2 cut(s) 104, 284
BseYI CCCAGC 1 cut(s) 424
BsgI GTGCAG 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 741
BshFI GGCC 2 cut(s) 31, 629
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 3 cut(s) 279, 349, 390
BslFI GGGAC 2 cut(s) 406, 685
BslI CCNNNNNNNGG 2 cut(s) 209, 320
BsmFI GGGAC 2 cut(s) 406, 685
BsnI GGCC 2 cut(s) 31, 629
Bsp1286I GDGCHC 1 cut(s) 402
BspACI CCGC 1 cut(s) 500
BspANI GGCC 2 cut(s) 31, 629
BspCNI CTCAG 1 cut(s) 147
BspFNI CGCG 1 cut(s) 741
BspMI ACCTGC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 2 cut(s) 121, 521
BssAI RCCGGY 1 cut(s) 389
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 687
Bst2BI CACGAG 1 cut(s) 687
Bst6I CTCTTC 1 cut(s) 294
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 1 cut(s) 155
BstENI CCTNNNNNAGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 567
BstFNI CGCG 1 cut(s) 741
BstHHI GCGC 1 cut(s) 741
BstMWI GCNNNNNNNGC 2 cut(s) 206, 541
BstPAI GACNNNNGTC 1 cut(s) 119
BstUI CGCG 1 cut(s) 741
BstV2I GAAGAC 1 cut(s) 119
BsuI GTATCC 1 cut(s) 275
BsuRI GGCC 2 cut(s) 31, 629
BtsCI GGATG 1 cut(s) 567
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 737
CfoI GCGC 1 cut(s) 741
Cfr10I RCCGGY 1 cut(s) 389
CseI GACGC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 4, 60
CviAII CATG 2 cut(s) 98, 190
CviQI GTAC 2 cut(s) 4, 60
DdeI CTNAG 1 cut(s) 155
DrdI GACNNNNNNGTC 1 cut(s) 689
DseDI GACNNNNNNGTC 1 cut(s) 689
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 207
FaeI CATG 2 cut(s) 101, 193
FaqI GGGAC 2 cut(s) 406, 685
FatI CATG 2 cut(s) 97, 189
FauNDI CATATG 1 cut(s) 358
FblI GTMKAC 1 cut(s) 123
FokI GGATG 1 cut(s) 574
FspBI CTAG 2 cut(s) 45, 239
GlaI GCGC 1 cut(s) 740
GsaI CCCAGC 1 cut(s) 428
HaeIII GGCC 2 cut(s) 31, 629
HapII CCGG 3 cut(s) 279, 349, 390
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 741
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 2 cut(s) 101, 193
Hin6I GCGC 1 cut(s) 739
HinP1I GCGC 1 cut(s) 739
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HinfI GANTC 5 cut(s) 67, 244, 310, 419, 723
HpaII CCGG 3 cut(s) 279, 349, 390
HphI GGTGA 2 cut(s) 167, 728
Hpy166II GTNNAC 2 cut(s) 124, 682
Hpy188III TCNNGA 7 cut(s) 23, 232, 307, 314, 440, 461, 623
Hpy8I GTNNAC 2 cut(s) 124, 682
HpyAV CCTTC 2 cut(s) 460, 464
HpyCH4V TGCA 6 cut(s) 82, 170, 200, 209, 653, 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 541
HpyF3I CTNAG 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 2 cut(s) 101, 193
HspAI GCGC 1 cut(s) 739
LweI GCATC 2 cut(s) 196, 487
MaeI CTAG 2 cut(s) 45, 239
MaeIII GTNAC 1 cut(s) 93
MboII GAAGA 4 cut(s) 124, 281, 623, 626
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 4 cut(s) 258, 405, 668, 729
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 9 cut(s) 82, 150, 153, 305, 525, 584, 619, 636, 696
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 3 cut(s) 218, 549, 663
MspI CCGG 3 cut(s) 279, 349, 390
MunI CAATTG 1 cut(s) 258
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 2 cut(s) 206, 541
NdeI CATATG 1 cut(s) 358
NlaIII CATG 2 cut(s) 101, 193
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 4 cut(s) 67, 244, 310, 723
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PshAI GACNNNNGTC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 424
RsaI GTAC 2 cut(s) 5, 61
RsaNI GTAC 2 cut(s) 4, 60
SaqAI TTAA 3 cut(s) 218, 549, 663
SchI GAGTC 1 cut(s) 428
SduI GDGCHC 1 cut(s) 402
SetI ASST 4 cut(s) 205, 214, 430, 546
SfaNI GCATC 2 cut(s) 196, 487
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 238
Sse9I AATT 4 cut(s) 258, 405, 668, 729
SsiI CCGC 1 cut(s) 500
SspMI CTAG 2 cut(s) 45, 239
TaqI TCGA 3 cut(s) 480, 657, 693
TasI AATT 4 cut(s) 258, 405, 668, 729
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 4 cut(s) 67, 244, 310, 723
Tru1I TTAA 3 cut(s) 218, 549, 663
Tru9I TTAA 3 cut(s) 218, 549, 663
TscAI CASTG 1 cut(s) 304
TspDTI ATGAA 4 cut(s) 178, 375, 403, 554
TspRI CASTG 1 cut(s) 304
XagI CCTNNNNNAGG 1 cut(s) 207
XapI RAATTY 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 2 cut(s) 45, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.