Rmu_sc0001132.1_g000016

O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001132.1
OG0000432
Physical Location & Seq
Forward (+)
63653 .. 64403
751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001132.1_g000016.1.cds

Sequence Viewer

Length: 429 bp
atgggtactgcacctgatgcaggtcagttaatggctatgctcttgaaactagtgaatcccaaaaatgcaattgaaatcggagttttcaccggatactctcttctcctcactgctctcacgattcctgattatggcaagccagagaaggaagggagtttcgactttgcttttgttgatgcggacaagaataactactggaactaccacaagaggctaatgaagctggttaagattggtgggatggttatctatgataacacactttggggagggtcagttgctctgcgtgaagaagatgttccagaggccaaaagggaatggaggcaatgtgcaatcgagtttaacaaattgatttcggctgaccctcgtgtcgaaatgtcccaagttcctttgggtgatggaatcacaatttgcaggcgcgtttgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

142

Amino Acids

15.9

Weight (kDa)

5.85

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 11
AccII CGCG 1 cut(s) 420
AciI CCGC 1 cut(s) 179
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 20, 131
AgsI TTSAA 2 cut(s) 46, 74
AhlI ACTAGT 1 cut(s) 49
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
AoxI GGCC 1 cut(s) 306
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 1 cut(s) 420
AsuHPI GGTGA 2 cut(s) 79, 407
BauI CACGAG 1 cut(s) 366
BccI CCATC 2 cut(s) 235, 392
BciVI GTATCC 1 cut(s) 86
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 11
BfuI GTATCC 1 cut(s) 86
BmsI GCATC 2 cut(s) 7, 166
BsaBI GATNNNNATC 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 89
BsaXI ACNNNNNCTCC 4 cut(s) 261, 291, 313, 343
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 131
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 332
Bse8I GATNNNNATC 1 cut(s) 245
BseGI GGATG 1 cut(s) 246
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 2 cut(s) 20, 131
BseMI GCAATG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 420
BshFI GGCC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 2 cut(s) 20, 131
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 308
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 308
BspFNI CGCG 1 cut(s) 420
BspMI ACCTGC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 332
BsrI ACTGG 1 cut(s) 200
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 137, 416
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 1 cut(s) 420
BstMWI GCNNNNNNNGC 2 cut(s) 17, 220
BstUI CGCG 1 cut(s) 420
BsuI GTATCC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 11
Cac8I GCNNGC 2 cut(s) 137, 416
CfoI GCGC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 6
CviJI RGCY 6 cut(s) 35, 139, 214, 223, 308, 359
CviKI_1 RGCY 6 cut(s) 35, 139, 214, 223, 308, 359
CviQI GTAC 1 cut(s) 6
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 18
FaiI YATR 3 cut(s) 38, 132, 252
FaqI GGGAC 1 cut(s) 364
FokI GGATG 1 cut(s) 253
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 419
HaeIII GGCC 1 cut(s) 308
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 420
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 3 cut(s) 55, 121, 402
HpaII CCGG 1 cut(s) 90
HphI GGTGA 2 cut(s) 79, 407
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 4 cut(s) 43, 118, 125, 302
HpyAV CCTTC 2 cut(s) 139, 143
HpyCH4V TGCA 5 cut(s) 11, 20, 68, 332, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 220
HspAI GCGC 1 cut(s) 418
LpnPI CCDG 9 cut(s) 6, 27, 103, 138, 153, 181, 209, 315, 400
LweI GCATC 2 cut(s) 7, 166
MaeI CTAG 1 cut(s) 50
MboII GAAGA 3 cut(s) 92, 302, 305
MfeI CAATTG 1 cut(s) 69
MluCI AATT 3 cut(s) 69, 347, 408
MnlI CCTC 6 cut(s) 116, 204, 263, 298, 315, 375
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 3 cut(s) 29, 228, 342
MspI CCGG 1 cut(s) 90
MunI CAATTG 1 cut(s) 69
MvnI CGCG 1 cut(s) 420
MwoI GCNNNNNNNGC 2 cut(s) 17, 220
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 3 cut(s) 55, 121, 402
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 3 cut(s) 29, 228, 342
SetI ASST 3 cut(s) 16, 25, 225
SfaNI GCATC 2 cut(s) 7, 166
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 3 cut(s) 69, 347, 408
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 50
TaqI TCGA 3 cut(s) 159, 336, 372
TasI AATT 3 cut(s) 69, 347, 408
TfiI GAWTC 3 cut(s) 55, 121, 402
Tru1I TTAA 3 cut(s) 29, 228, 342
Tru9I TTAA 3 cut(s) 29, 228, 342
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 1 cut(s) 115
XagI CCTNNNNNAGG 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.