Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

6066407 .. 6067976

Gene Structure 1570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46775

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCCACTGCCAGCCACCCCAACCATAGATATAGATCGTGAGACATATGAACAAGTAGGATTACCAATCATAAAGAAAGCTGGTGTTGAGCACAAAATTGACTTCATTGAATCTGAGGCTGTACCAGCTCTTGATAAGCTATTAGAAAATCCTGAAAATGAAGGCAGTTTTGACTTTGCCTACGTGGATGCCGACAAGGTTAACAATTGGAATTACCACGAGAGACTACTGAAGCTGTTGAAGGTGGGTGGCTTAGTTGTTTATGAACACACTCTGCAGAGCAGCAGTAGCATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

99

Amino Acids

11.1

Weight (kDa)

4.67

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	8 - 94	7.9e-27	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	110, 241
AluBI	AGCT	4 cut(s)	80, 128, 139, 235
AluI	AGCT	4 cut(s)	80, 128, 139, 235
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	35, 217
ApeKI	GCWGC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	35, 217
BfmI	CTRYAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
BmsI	GCATC	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	33
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	33
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	35, 217
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	291
BssMI	GATC	1 cut(s)	34
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	114, 253
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	2 cut(s)	35, 217
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 288
BstSFI	CTRYAG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	122
CviJI	RGCY	7 cut(s)	14, 80, 119, 128, 139, 235, 252
CviKI_1	RGCY	7 cut(s)	14, 80, 119, 128, 139, 235, 252
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	2 cut(s)	114, 253
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	251
FaiI	YATR	6 cut(s)	26, 32, 46, 48, 71, 264
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	283
GluI	GCNGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	110
HpaI	GTTAAC	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	3 cut(s)	38, 131, 152
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	155, 235
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 288
HpyF3I	CTNAG	2 cut(s)	114, 253
HpySE526I	ACGT	1 cut(s)	183
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	4 cut(s)	24, 66, 138, 165
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	1 cut(s)	178
MaeII	ACGT	1 cut(s)	183
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MfeI	CAATTG	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	3 cut(s)	96, 205, 211
MnlI	CCTC	1 cut(s)	109
MseI	TTAA	1 cut(s)	201
MunI	CAATTG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	125, 288
NdeI	CATATG	1 cut(s)	46
NdeII	GATC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	279
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	7 cut(s)	82, 130, 141, 186, 201, 237, 246
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	96, 205, 211
TaiI	ACGT	1 cut(s)	186
TasI	AATT	3 cut(s)	96, 205, 211
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	4 cut(s)	63, 94, 174, 279
TspRI	CASTG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.