Rh2BG160700

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000432
Physical Location & Seq
Reverse (-)
13899397 .. 13900374
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG160700.1

Sequence Viewer

Length: 534 bp
ATGGCCATGCTCTTGAAACTTGTGAATGCAAAGAAGACAATCGAGTTGGAGTTTTTACTGGATATTCTCTTCTGCTTACGGCTCTCACAATCCCTGAAGACGCGCGGCAAGATTATGGCCATAGATAGAAATCGTAAGACATACGAAATAGGCCTCCCAATCATACAAAAAGCCGGAGTTGAGTACAAAATCGACTACATCGAATCCCCGGCTCTGCCTGTCCTTGACAATCTTTTGGGAGAACCAAAGAATGAGAGTGATTTCGACTTTGCATTTGTCGATGCTGACAAAGATAACTATTGGAATTATCATGAGAGGCTGATGAAACTGGTGAAGATTGGTGGGATTGTTATGTATGATAATACACTGTGGGGAGGGGCAGTGGCTAAACCTGAAGACGCTGTTCCGGAGACCAAAAGGGAGCTGAGGCGGGCTACAATTGAGTTTAACAAGTCAGTTTCGGCTGACCCACGAGTTGAAATCTCTCATGCTTCTGTAGGAGACGGAATCATCATTTGCAGACGCATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

177

Amino Acids

20.12

Weight (kDa)

6.74

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 2 - 176 1.7e-55 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 103, 105
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 2 cut(s) 105, 430
AcoI YGGCCR 2 cut(s) 3, 117
AcuI CTGAAG 2 cut(s) 116, 414
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 2 cut(s) 16, 479
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 404, 495
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 3 cut(s) 3, 117, 151
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AspLEI GCGC 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 343
BalI TGGCCA 2 cut(s) 5, 119
BauI CACGAG 1 cut(s) 471
BbsI GAAGAC 3 cut(s) 41, 104, 402
BbvCI CCTCAGC 1 cut(s) 425
BceAI ACGGC 1 cut(s) 95
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 404, 495
BfmI CTRYAG 1 cut(s) 495
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 3 cut(s) 41, 104, 402
Bpu10I CCTNAGC 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bse1I ACTGG 2 cut(s) 63, 333
Bse8I GATNNNNATC 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 406
BseDI CCNNGG 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 129
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 2 cut(s) 63, 333
Bsh1236I CGCG 2 cut(s) 103, 105
BshFI GGCC 3 cut(s) 5, 119, 153
BsiSI CCGG 3 cut(s) 174, 209, 407
BsmAI GTCTC 2 cut(s) 404, 495
BsmBI CGTCTC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 3 cut(s) 5, 119, 153
Bso31I GGTCTC 1 cut(s) 404
Bsp13I TCCGGA 1 cut(s) 406
BspACI CCGC 2 cut(s) 105, 430
BspANI GGCC 3 cut(s) 5, 119, 153
BspCNI CTCAG 1 cut(s) 417
BspEI TCCGGA 1 cut(s) 406
BspFNI CGCG 2 cut(s) 103, 105
BspHI TCATGA 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 404
BsrI ACTGG 2 cut(s) 63, 333
BssECI CCNNGG 1 cut(s) 207
BssSI CACGAG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 471
Bst4CI ACNGT 1 cut(s) 369
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 425
BstFNI CGCG 2 cut(s) 103, 105
BstHHI GCGC 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 404, 495
BstSCI CCNGG 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 2 cut(s) 103, 105
BstV2I GAAGAC 3 cut(s) 41, 104, 402
BsuRI GGCC 3 cut(s) 5, 119, 153
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 365, 387
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 1 cut(s) 310
CfoI GCGC 1 cut(s) 105
CseI GACGC 2 cut(s) 109, 407
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 7, 311, 488
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 425
EaeI YGGCCR 2 cut(s) 3, 117
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco147I AGGCCT 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 404
Eco57I CTGAAG 2 cut(s) 116, 414
Esp3I CGTCTC 1 cut(s) 495
FaeI CATG 3 cut(s) 10, 314, 491
FaiI YATR 9 cut(s) 8, 116, 122, 142, 164, 312, 353, 357, 489
FatI CATG 3 cut(s) 6, 310, 487
FauI CCCGC 1 cut(s) 423
Fnu4HI GCNGC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 106
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 106
HaeIII GGCC 3 cut(s) 5, 119, 153
HapII CCGG 3 cut(s) 174, 209, 407
HgaI GACGC 2 cut(s) 109, 407
HhaI GCGC 1 cut(s) 105
Hin1II CATG 3 cut(s) 10, 314, 491
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 2 cut(s) 203, 507
HpaII CCGG 3 cut(s) 174, 209, 407
HphI GGTGA 1 cut(s) 343
Hpy188III TCNNGA 3 cut(s) 13, 311, 407
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 3 cut(s) 29, 272, 519
HpyF3I CTNAG 1 cut(s) 425
Hsp92II CATG 3 cut(s) 10, 314, 491
HspAI GCGC 1 cut(s) 103
Kpn2I TCCGGA 1 cut(s) 406
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 8 cut(s) 44, 107, 187, 222, 231, 314, 405, 420
LweI GCATC 1 cut(s) 271
MboII GAAGA 5 cut(s) 46, 61, 109, 346, 407
MfeI CAATTG 1 cut(s) 438
MlsI TGGCCA 2 cut(s) 5, 119
MluCI AATT 2 cut(s) 304, 438
MluNI TGGCCA 2 cut(s) 5, 119
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 4 cut(s) 164, 309, 368, 420
Mox20I TGGCCA 2 cut(s) 5, 119
MroI TCCGGA 1 cut(s) 406
MscI TGGCCA 2 cut(s) 5, 119
MseI TTAA 1 cut(s) 447
Msp20I TGGCCA 2 cut(s) 5, 119
MspI CCGG 3 cut(s) 174, 209, 407
MspR9I CCNGG 1 cut(s) 209
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 31
MvnI CGCG 2 cut(s) 103, 105
NciI CCSGG 1 cut(s) 209
NlaIII CATG 3 cut(s) 10, 314, 491
PagI TCATGA 1 cut(s) 310
PceI AGGCCT 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 203, 507
PkrI GCNGC 1 cut(s) 107
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 209
SetI ASST 2 cut(s) 394, 426
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 495
Sse9I AATT 2 cut(s) 304, 438
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 2 cut(s) 105, 430
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 369
TaqI TCGA 5 cut(s) 42, 192, 201, 264, 279
TasI AATT 2 cut(s) 304, 438
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 2 cut(s) 203, 507
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 2 cut(s) 372, 387
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 2 cut(s) 372, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.