Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

12532384 .. 12534320

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG083700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCAGCAAATGGAGAAGAGCAGAAAAGCAGGCACCAGGAAGTTGGCCACAAAAGCCTTCTTCAAAGTGACGCTCTTTACCAGTATATTTTGGAGACTAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAGCTCAGAGAGTTGACAGCAAAGCACCCATGGAACATCATGACCACTTCAGCTGATGAAGGTCAATTCTTGAACATGCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATTGGTGTCTACACTGGCTACTCCCTCTTGGCCACAGCCCTTGCTCTCCCTGAAGATGGGAAGGTCGATAATTCATCCCTCAAAATCGATCATATATACGAACAATATATTTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019748 GO:0032259 GO:0042221 GO:0042409 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

121

Amino Acids

13.78

Weight (kDa)

5.13

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	32 - 105	5.7e-31	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	33
AccI	GTMKAC	1 cut(s)	255
AcoI	YGGCCR	2 cut(s)	46, 276
AcuI	CTGAAG	2 cut(s)	165, 318
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	65, 205
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	136, 185, 220
AluI	AGCT	3 cut(s)	136, 185, 220
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	46, 276
ApeKI	GCWGC	1 cut(s)	5
BalI	TGGCCA	2 cut(s)	48, 278
BanI	GGYRCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	89
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	161, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	82, 265
BseBI	CCWGG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	161, 240
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	2 cut(s)	82, 265
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	48, 278
BshNI	GGYRCC	1 cut(s)	33
BshVI	ATCGAT	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	48, 278
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	334
Bsp19I	CCATGG	2 cut(s)	161, 240
BspANI	GGCC	2 cut(s)	48, 278
BspCNI	CTCAG	1 cut(s)	150
BspDI	ATCGAT	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	82, 265
BssECI	CCNNGG	2 cut(s)	161, 240
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	2 cut(s)	161, 240
Bst2UI	CCWGG	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	2 cut(s)	161, 240
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 217
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	48, 278
BsuTUI	ATCGAT	1 cut(s)	333
BtgI	CCRYGG	2 cut(s)	161, 240
BtsCI	GGATG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	32
CciI	TCATGA	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	333
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	106
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	5 cut(s)	127, 162, 172, 208, 241
CviJI	RGCY	9 cut(s)	48, 57, 118, 136, 185, 220, 264, 278, 284
CviKI_1	RGCY	9 cut(s)	48, 57, 118, 136, 185, 220, 264, 278, 284
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	2 cut(s)	46, 276
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	2 cut(s)	161, 240
Eco24I	GRGCYC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	165, 318
EcoICRI	GAGCTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	161, 240
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	2 cut(s)	161, 240
FaeI	CATG	5 cut(s)	130, 165, 175, 211, 244
FatI	CATG	5 cut(s)	126, 161, 171, 207, 240
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	307
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	48, 278
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	5 cut(s)	130, 165, 175, 211, 244
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	122
Hpy166II	GTNNAC	3 cut(s)	106, 147, 256
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	2 cut(s)	172, 202
Hpy8I	GTNNAC	3 cut(s)	106, 147, 256
HpyAV	CCTTC	4 cut(s)	68, 124, 185, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 217
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	5 cut(s)	130, 165, 175, 211, 244
Kzo9I	GATC	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	7 cut(s)	16, 23, 50, 95, 132, 246, 309
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	3 cut(s)	29, 53, 311
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	2 cut(s)	48, 278
MluCI	AATT	2 cut(s)	197, 316
MluNI	TGGCCA	2 cut(s)	48, 278
MnlI	CCTC	2 cut(s)	281, 335
Mox20I	TGGCCA	2 cut(s)	48, 278
MscI	TGGCCA	2 cut(s)	48, 278
Msp20I	TGGCCA	2 cut(s)	48, 278
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	54, 217
NcoI	CCATGG	2 cut(s)	161, 240
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	5 cut(s)	130, 165, 175, 211, 244
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	1 cut(s)	211
PagI	TCATGA	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	5 cut(s)	138, 187, 196, 222, 312
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	2 cut(s)	197, 316
SspMI	CTAG	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	2 cut(s)	161, 240
TaqI	TCGA	2 cut(s)	312, 333
TasI	AATT	2 cut(s)	197, 316
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	143, 204, 309
TspRI	CASTG	1 cut(s)	265
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.