Rorug05G0266900

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000432
Physical Location & Seq
Reverse (-)
30091281 .. 30092689
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0266900.1

Sequence Viewer

Length: 1038 bp
ATGTCCTCCATTGATGCGGTTACGGCTAGCTTTGCAACCTCCCTCGCTCTTGCAGGTTCAGATGTGATTGACATCTCACACTTGAATGATGCCGGAAATCAACGTACCTCTCAAGCCTACCTCTTGGCAGATCCCTTGACAAAGAAGCCATTTGGAACTCCAGATTTGCAACACCACTTCAGACGTGAGTACGATGGATTGGAAGATCCTCTAACCATCCCCATGAAAACATTGTTTTTCTGGGTTCGCATCTCTGGCATCCCTCCTGCTTTGGAAGAAAAAGGTATTATAATGAAAGTGGCATCACTTGCCGGTAAGTTCTTGGCGATTGATCAAAAGCTTTTTGACAACACGGGTAAAATTAGGGTTCATGTAGCCCATGATATCTCCCTGCCCTTTCATTTGAAGAAAACCCTAAAGATTATTTCTGGAGTGGTCAAAGAGATCACGTATGTTTTTGAGAACTTGGTTGGTAAATGCAACGACTGCAATTTAATTGTTCATGAGCAGGGATCCTGCCCTAAAACTGCAGCACAGGGACTGGTGAAACAGGTCACAGTAGAAGAGCCAACACGGCTCGCTCTTGCCTCCCAATTCCCAGGTTTTACTAACCTGCGTTTTCAAAATGGAGCGTTCCGCTTTCAAGTCCCAGTCACTGCTGAACAACAGACAAGCAAACGAGACCGTTCTACAACATCTTACACTTCTCCAAAGAAACTAAAAGTGTTTTTCAAGGAAGGGGAAAATGCCACTAGTCCATCCATGCTCCAAAAGTGGCTGAAAGTACCGAAATTCCACACAAAATTCTCTGCACAATCTCTTGGTTTGATTGAGGCTCCAGGAGGAGTTTTGATTCCTAAGGAAAGCATAAGCCTAAAAGAGGACTCGCTTCCGGTCAAGAAGAAGAAGGGAAGGCCGTTGGGGTCAAAGAACAAGAATCCCTCCAAGAATAAAAAAGTTTATGCTGAAGAAGTGCTAAGTATGATCTGCCCTAGCAAACCTCCAAGCCCTAGTGTTAAGGGCAAGGGGAAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

345

Amino Acids

37.94

Weight (kDa)

9.7

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 290
Acc36I ACCTGC 2 cut(s) 44, 621
AciI CCGC 2 cut(s) 17, 637
AclWI GGATC 4 cut(s) 125, 200, 507, 520
AcsI RAATTY 3 cut(s) 791, 803, 1032
AcuI CTGAAG 2 cut(s) 163, 987
AfaI GTAC 3 cut(s) 106, 191, 786
AfiI CCNNNNNNNGG 1 cut(s) 880
AgsI TTSAA 5 cut(s) 85, 406, 623, 644, 733
AhlI ACTAGT 1 cut(s) 752
AjiI CACGTC 1 cut(s) 185
AjnI CCWGG 2 cut(s) 598, 838
AluBI AGCT 2 cut(s) 30, 340
AluI AGCT 2 cut(s) 30, 340
Alw26I GTCTC 1 cut(s) 675
AlwI GGATC 4 cut(s) 125, 200, 507, 520
AlwNI CAGNNNCTG 2 cut(s) 541, 656
AoxI GGCC 1 cut(s) 914
ApeKI GCWGC 1 cut(s) 530
ApoI RAATTY 3 cut(s) 791, 803, 1032
AsuHPI GGTGA 1 cut(s) 556
AsuNHI GCTAGC 1 cut(s) 26
AxyI CCTNAGG 1 cut(s) 858
BamHI GGATCC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 542
BccI CCATC 3 cut(s) 188, 224, 766
BceAI ACGGC 3 cut(s) 39, 590, 901
BciT130I CCWGG 2 cut(s) 600, 840
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 675
BcuI ACTAGT 1 cut(s) 752
BfaI CTAG 4 cut(s) 27, 753, 993, 1011
BfmI CTRYAG 1 cut(s) 528
BfuAI ACCTGC 2 cut(s) 44, 621
BglI GCCNNNNNGGC 1 cut(s) 574
BisI GCNGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 532
Bme1390I CCNGG 2 cut(s) 600, 840
BmgBI CACGTC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 514, 837
BmrFI CCNGG 2 cut(s) 600, 840
BmrI ACTGGG 1 cut(s) 644
BmsI GCATC 5 cut(s) 4, 79, 258, 267, 311
BmtI GCTAGC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 644
BpmI CTGGAG 3 cut(s) 144, 450, 822
BpuEI CTTGAG 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 675
BsaJI CCNNGG 1 cut(s) 598
BsaWI WCCGGW 1 cut(s) 892
Bsc4I CCNNNNNNNGG 1 cut(s) 880
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 2 cut(s) 546, 650
Bse21I CCTNAGG 1 cut(s) 858
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 2 cut(s) 600, 840
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 3 cut(s) 216, 258, 758
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 880
BseNI ACTGG 2 cut(s) 546, 650
BseRI GAGGAG 1 cut(s) 858
BseXI GCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 795
BshFI GGCC 1 cut(s) 916
BsiSI CCGG 3 cut(s) 93, 312, 893
BslFI GGGAC 2 cut(s) 552, 632
BslI CCNNNNNNNGG 1 cut(s) 880
BsmAI GTCTC 1 cut(s) 675
BsmFI GGGAC 2 cut(s) 552, 632
BsnI GGCC 1 cut(s) 916
Bso31I GGTCTC 1 cut(s) 675
Bsp143I GATC 6 cut(s) 130, 205, 331, 444, 512, 984
BspACI CCGC 2 cut(s) 17, 637
BspANI GGCC 1 cut(s) 916
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 514, 837
BspMAI CTGCAG 1 cut(s) 532
BspMI ACCTGC 2 cut(s) 44, 621
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 4 cut(s) 125, 200, 507, 520
BspQI GCTCTTC 1 cut(s) 558
BspTNI GGTCTC 1 cut(s) 675
BsrFI RCCGGY 1 cut(s) 311
BsrI ACTGG 2 cut(s) 546, 650
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 6 cut(s) 130, 205, 331, 444, 512, 984
Bst2UI CCWGG 2 cut(s) 600, 840
Bst4CI ACNGT 2 cut(s) 559, 686
Bst6I CTCTTC 1 cut(s) 558
BstAPI GCANNNNNTGC 2 cut(s) 308, 486
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 28, 579
BstDEI CTNAG 2 cut(s) 858, 977
BstENI CCTNNNNNAGG 1 cut(s) 878
BstF5I GGATG 3 cut(s) 216, 258, 758
BstKTI GATC 6 cut(s) 133, 208, 334, 447, 515, 987
BstMAI GTCTC 1 cut(s) 675
BstMBI GATC 6 cut(s) 130, 205, 331, 444, 512, 984
BstMWI GCNNNNNNNGC 6 cut(s) 23, 32, 255, 308, 486, 574
BstNI CCWGG 2 cut(s) 600, 840
BstSCI CCNGG 2 cut(s) 598, 838
BstSFI CTRYAG 1 cut(s) 528
BstV1I GCAGC 1 cut(s) 542
BstX2I RGATCY 3 cut(s) 130, 205, 512
BstYI RGATCY 3 cut(s) 130, 205, 512
Bsu36I CCTNAGG 1 cut(s) 858
BsuRI GGCC 1 cut(s) 916
BtrI CACGTC 1 cut(s) 185
BtsCI GGATG 3 cut(s) 216, 258, 758
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 1 cut(s) 654
BveI ACCTGC 2 cut(s) 44, 621
Cac8I GCNNGC 2 cut(s) 28, 579
CaiI CAGNNNCTG 2 cut(s) 541, 656
CciI TCATGA 1 cut(s) 502
Cfr10I RCCGGY 1 cut(s) 311
Csp6I GTAC 3 cut(s) 105, 190, 785
CviAII CATG 5 cut(s) 223, 371, 380, 503, 763
CviQI GTAC 3 cut(s) 105, 190, 785
DdeI CTNAG 2 cut(s) 858, 977
DpnI GATC 6 cut(s) 132, 207, 333, 446, 514, 986
DpnII GATC 6 cut(s) 130, 205, 331, 444, 512, 984
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco31I GGTCTC 1 cut(s) 675
Eco32I GATATC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 163, 987
Eco81I CCTNAGG 1 cut(s) 858
EcoNI CCTNNNNNAGG 1 cut(s) 878
EcoRII CCWGG 2 cut(s) 598, 838
EcoRV GATATC 1 cut(s) 385
FaeI CATG 5 cut(s) 226, 374, 383, 506, 766
FaqI GGGAC 2 cut(s) 552, 632
FatI CATG 5 cut(s) 222, 370, 379, 502, 762
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 531
FokI GGATG 3 cut(s) 203, 245, 745
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 4 cut(s) 27, 753, 993, 1011
GluI GCNGC 1 cut(s) 531
GsuI CTGGAG 3 cut(s) 144, 450, 822
HaeIII GGCC 1 cut(s) 916
HapII CCGG 3 cut(s) 93, 312, 893
Hin1II CATG 5 cut(s) 226, 374, 383, 506, 766
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 3 cut(s) 853, 884, 937
HpaII CCGG 3 cut(s) 93, 312, 893
HphI GGTGA 1 cut(s) 556
Hpy188I TCNGA 2 cut(s) 61, 182
Hpy188III TCNNGA 4 cut(s) 161, 429, 503, 898
HpyAV CCTTC 3 cut(s) 731, 901, 906
HpyCH4III ACNGT 2 cut(s) 559, 686
HpyCH4IV ACGT 3 cut(s) 103, 184, 449
HpyCH4V TGCA 7 cut(s) 35, 53, 169, 480, 489, 530, 812
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 32, 255, 308, 486, 574
HpyF3I CTNAG 2 cut(s) 858, 977
HpySE526I ACGT 3 cut(s) 103, 184, 449
Hsp92II CATG 5 cut(s) 226, 374, 383, 506, 766
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 6 cut(s) 130, 205, 331, 444, 512, 984
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 3 cut(s) 629, 771, 841
Lsp1109I GCAGC 1 cut(s) 542
LweI GCATC 5 cut(s) 4, 79, 258, 267, 311
MaeI CTAG 4 cut(s) 27, 753, 993, 1011
MaeII ACGT 3 cut(s) 103, 184, 449
MaeIII GTNAC 3 cut(s) 19, 553, 652
MalI GATC 6 cut(s) 132, 207, 333, 446, 514, 986
MboI GATC 6 cut(s) 130, 205, 331, 444, 512, 984
MboII GAAGA 7 cut(s) 215, 287, 418, 575, 913, 916, 980
MflI RGATCY 3 cut(s) 130, 205, 512
MluCI AATT 7 cut(s) 360, 490, 495, 593, 791, 803, 1032
MlyI GAGTC 1 cut(s) 878
MseI TTAA 2 cut(s) 494, 1017
MslI CAYNNNNRTG 2 cut(s) 84, 221
MspI CCGG 3 cut(s) 93, 312, 893
MspR9I CCNGG 2 cut(s) 600, 840
MvaI CCWGG 2 cut(s) 600, 840
MwoI GCNNNNNNNGC 6 cut(s) 23, 32, 255, 308, 486, 574
NdeII GATC 6 cut(s) 130, 205, 331, 444, 512, 984
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 5 cut(s) 226, 374, 383, 506, 766
NlaIV GGNNCC 2 cut(s) 514, 837
NmuCI GTSAC 2 cut(s) 553, 652
PagI TCATGA 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 558
PfeI GAWTC 2 cut(s) 853, 937
PfoI TCCNGGA 1 cut(s) 838
PkrI GCNGC 1 cut(s) 532
PleI GAGTC 1 cut(s) 878
PpsI GAGTC 1 cut(s) 878
Ppu21I YACGTR 1 cut(s) 450
PsiI TTATAA 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 598, 838
PspGI CCWGG 2 cut(s) 598, 838
PspN4I GGNNCC 2 cut(s) 514, 837
PstI CTGCAG 1 cut(s) 532
PstNI CAGNNNCTG 2 cut(s) 541, 656
PsuI RGATCY 3 cut(s) 130, 205, 512
RsaI GTAC 3 cut(s) 106, 191, 786
RsaNI GTAC 3 cut(s) 105, 190, 785
RseI CAYNNNNRTG 2 cut(s) 84, 221
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 2 cut(s) 494, 1017
SatI GCNGC 1 cut(s) 531
Sau3AI GATC 6 cut(s) 130, 205, 331, 444, 512, 984
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 2 cut(s) 600, 840
SfaNI GCATC 5 cut(s) 4, 79, 258, 267, 311
SfcI CTRYAG 1 cut(s) 528
SmiMI CAYNNNNRTG 2 cut(s) 84, 221
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
SpeI ACTAGT 1 cut(s) 752
Sse9I AATT 7 cut(s) 360, 490, 495, 593, 791, 803, 1032
SsiI CCGC 2 cut(s) 17, 637
SspMI CTAG 4 cut(s) 27, 753, 993, 1011
StyD4I CCNGG 2 cut(s) 598, 838
TaaI ACNGT 2 cut(s) 559, 686
TaiI ACGT 3 cut(s) 106, 187, 452
TasI AATT 7 cut(s) 360, 490, 495, 593, 791, 803, 1032
TfiI GAWTC 2 cut(s) 853, 937
Tru1I TTAA 2 cut(s) 494, 1017
Tru9I TTAA 2 cut(s) 494, 1017
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 2 cut(s) 553, 652
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 2 cut(s) 553, 652
TspDTI ATGAA 5 cut(s) 239, 308, 359, 389, 491
TspRI CASTG 1 cut(s) 661
XagI CCTNNNNNAGG 1 cut(s) 878
XapI RAATTY 3 cut(s) 791, 803, 1032
XspI CTAG 4 cut(s) 27, 753, 993, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.