Rh5CG376400

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000432
Physical Location & Seq
Forward (+)
48737511 .. 48739340
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG376400.1

Sequence Viewer

Length: 531 bp
ATGGCCATGCTCTTGAAACTTGTGAATGCAAAGAAGACAATTGAAGTTGGAGTTTTTACTGGATACTCTCTTCTCCTTACGGCTCTCACAATCCCTGACGACGGCAAGATTATAGCCATAGATAGAGATCGTAAAACATACGAAATGGGCCTCCCTATCATACAAAAAGCCGGAGTTGAGCACAAAATCGACTACATGGAATCCCTGGCTCTGCCTGTCCTTGACAATCTCTTGGGAGAACCAAAGAATGAGGGTGATTTCGACTTTGCATATGTCGATGCTGACAAAGATAACTATTGGAATTATCATGAGAGACTGATGAAACTGGTGAAGATTGGTGGGATTGTTATGTATGATAATACACTATGGGGAGGGGCAGTGGCTAAGTCTGAAGACGCTGTTCCGGAGACCAAAAGAAAGTTGAGGCAGGCTACAATTGAGTTTAACAAGTCAGTTTCAGCTGACCCTCGAGTTGAAATCTCTCATGTTTCTGTAGGAGATGGAATCACCATCTGCAGACGCATTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

176

Amino Acids

19.68

Weight (kDa)

5.66

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 2 - 175 8.9e-70 O-methyltransferase
Methyltransf_24 PF13578 14 - 120 6.1e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 3 cut(s) 16, 44, 476
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 461
AluI AGCT 1 cut(s) 461
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 307, 401
Ama87I CYCGRG 1 cut(s) 468
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 2 cut(s) 3, 148
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 3 cut(s) 266, 340, 499
AvaI CYCGRG 1 cut(s) 468
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 41, 399
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 2 cut(s) 494, 518
BceAI ACGGC 2 cut(s) 96, 118
BciT130I CCWGG 1 cut(s) 206
BciVI GTATCC 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 307, 401
BfmI CTRYAG 2 cut(s) 492, 514
BfuI GTATCC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 2 cut(s) 41, 399
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 64, 330
Bse8I GATNNNNATC 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 403
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 101
BseNI ACTGG 2 cut(s) 64, 330
BshFI GGCC 2 cut(s) 5, 150
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 468
BsiSI CCGG 2 cut(s) 171, 404
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 2 cut(s) 307, 401
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 2 cut(s) 5, 150
Bso31I GGTCTC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 183
Bsp13I TCCGGA 1 cut(s) 403
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 2 cut(s) 5, 150
BspEI TCCGGA 1 cut(s) 403
BspHI TCATGA 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 401
BsrI ACTGG 2 cut(s) 64, 330
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 384
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 2 cut(s) 307, 401
BstMBI GATC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 2 cut(s) 492, 514
BstV2I GAAGAC 2 cut(s) 41, 399
BsuI GTATCC 1 cut(s) 56
BsuRI GGCC 2 cut(s) 5, 150
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 429
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 404
CviAII CATG 4 cut(s) 7, 196, 308, 485
CviJI RGCY 9 cut(s) 5, 83, 116, 150, 170, 209, 383, 431, 461
CviKI_1 RGCY 9 cut(s) 5, 83, 116, 150, 170, 209, 383, 431, 461
DdeI CTNAG 1 cut(s) 384
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 4 cut(s) 10, 199, 311, 488
FatI CATG 4 cut(s) 6, 195, 307, 484
FauNDI CATATG 1 cut(s) 271
HaeIII GGCC 2 cut(s) 5, 150
HapII CCGG 2 cut(s) 171, 404
HgaI GACGC 1 cut(s) 404
Hin1II CATG 4 cut(s) 10, 199, 311, 488
HinfI GANTC 2 cut(s) 200, 504
HpaII CCGG 2 cut(s) 171, 404
HphI GGTGA 3 cut(s) 266, 340, 499
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 3 cut(s) 13, 308, 404
Hpy99I CGWCG 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 29, 269, 516
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 4 cut(s) 10, 199, 311, 488
Kpn2I TCCGGA 1 cut(s) 403
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 9 cut(s) 45, 108, 184, 191, 218, 228, 311, 413, 417
LweI GCATC 1 cut(s) 268
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 4 cut(s) 46, 62, 343, 404
MfeI CAATTG 2 cut(s) 39, 435
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 39, 301, 435
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 5 cut(s) 161, 244, 365, 417, 477
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 403
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 2 cut(s) 171, 404
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 2 cut(s) 39, 435
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 206
NdeI CATATG 1 cut(s) 271
NdeII GATC 1 cut(s) 127
NlaIII CATG 4 cut(s) 10, 199, 311, 488
PaeR7I CTCGAG 1 cut(s) 468
PagI TCATGA 1 cut(s) 307
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 200, 504
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspPI GGNCC 1 cut(s) 148
PspXI VCTCGAGB 1 cut(s) 468
PstI CTGCAG 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 461
SaqAI TTAA 1 cut(s) 444
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 183
SetI ASST 1 cut(s) 463
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 2 cut(s) 492, 514
Sfr274I CTCGAG 1 cut(s) 468
SlaI CTCGAG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 3 cut(s) 39, 301, 435
StyD4I CCNGG 1 cut(s) 204
TaqI TCGA 4 cut(s) 189, 261, 276, 469
TasI AATT 3 cut(s) 39, 301, 435
TfiI GAWTC 2 cut(s) 200, 504
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 384
TspDTI ATGAA 1 cut(s) 335
TspRI CASTG 1 cut(s) 384
XhoI CTCGAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.