Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032103.1

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1135

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032103.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 571 bp

ggctgggatgtctactgcaccagatggaggtcagctactagccatgctgttgaagctagtagatgcaaagaagactattgaaattggggttttcacgggatactctcttctcctcactgcgcttacaattcccgaggatggcaagattgtagccattgatatagatagtgagacctatgaacaagtagggttgccaatcataaagaaagcaggtgttgagcacaaaattgatttcattgaatccgaggctgtaccagttcttgataagctattagaaaatcctgaaaatgaaggcagttttgactttgcctacgtggatgccgacaaggttaacaattggaattaccacgagagactactgaagctgttgaaggtgggtggcttagttgtctatgacaacacactcgtcagaggatcagtcgcattgcctgatgagctagttccagagctgaggaaacagcgcagacagctagccattgagcataacaagacacttgcagccgatccacgtattcaaatctctcatgcttctgtgggtgatgggatgatgatttgtcgccgaatcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

189

Amino Acids

20.84

Weight (kDa)

5.13

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	12
AclWI	GGATC	2 cut(s)	422, 498
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	27, 138
AgsI	TTSAA	5 cut(s)	53, 81, 240, 371, 516
AluBI	AGCT	7 cut(s)	35, 56, 269, 365, 437, 449, 470
AluI	AGCT	7 cut(s)	35, 56, 269, 365, 437, 449, 470
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	2 cut(s)	165, 347
AlwI	GGATC	2 cut(s)	422, 498
Ama87I	CYCGRG	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	498
AspLEI	GCGC	2 cut(s)	122, 463
AsuHPI	GGTGA	1 cut(s)	549
AsuNHI	GCTAGC	1 cut(s)	470
AvaI	CYCGRG	1 cut(s)	132
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	223
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	3 cut(s)	18, 132, 534
BciVI	GTATCC	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	165, 347
BfaI	CTAG	4 cut(s)	39, 57, 438, 471
BfuAI	ACCTGC	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	1 cut(s)	499
BlsI	GCNGC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	53, 308
BmtI	GCTAGC	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	450
BsaAI	YACGTR	2 cut(s)	314, 510
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	133, 244
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 138
Bse1I	ACTGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	133, 244
BseGI	GGATG	4 cut(s)	13, 143, 323, 550
BseLI	CCNNNNNNNGG	2 cut(s)	27, 138
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	510
BseYI	CCCAGC	1 cut(s)	3
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	27, 138
BsmAI	GTCTC	2 cut(s)	165, 347
Bso31I	GGTCTC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	414, 503
BspCNI	CTCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	201
BspOI	GCTAGC	1 cut(s)	474
BspPI	GGATC	2 cut(s)	422, 498
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	133, 244
BssMI	GATC	2 cut(s)	414, 503
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
Bst6I	CTCTTC	1 cut(s)	112
BstBAI	YACGTR	2 cut(s)	314, 510
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	2 cut(s)	383, 450
BstF5I	GGATG	4 cut(s)	13, 143, 323, 550
BstHHI	GCGC	2 cut(s)	122, 463
BstKTI	GATC	2 cut(s)	417, 506
BstMAI	GTCTC	2 cut(s)	165, 347
BstMBI	GATC	2 cut(s)	414, 503
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 434, 467
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	93
BtsCI	GGATG	4 cut(s)	13, 143, 323, 550
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	472
CfoI	GCGC	2 cut(s)	122, 463
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	3 cut(s)	44, 525, 566
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	2 cut(s)	383, 450
DpnI	GATC	2 cut(s)	416, 505
DpnII	GATC	2 cut(s)	414, 503
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	132
FaeI	CATG	3 cut(s)	47, 528, 569
FaiI	YATR	8 cut(s)	45, 162, 178, 201, 394, 484, 526, 567
FatI	CATG	3 cut(s)	43, 524, 565
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	499
FokI	GGATG	4 cut(s)	20, 150, 330, 557
Fsp4HI	GCNGC	1 cut(s)	499
FspBI	CTAG	4 cut(s)	39, 57, 438, 471
GlaI	GCGC	2 cut(s)	121, 462
GluI	GCNGC	1 cut(s)	499
GsaI	CCCAGC	1 cut(s)	7
HhaI	GCGC	2 cut(s)	122, 463
Hin1II	CATG	3 cut(s)	47, 528, 569
Hin6I	GCGC	2 cut(s)	120, 461
HinP1I	GCGC	2 cut(s)	120, 461
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HinfI	GANTC	2 cut(s)	240, 562
HpaI	GTTAAC	1 cut(s)	332
HphI	GGTGA	1 cut(s)	549
Hpy166II	GTNNAC	2 cut(s)	13, 332
Hpy188I	TCNGA	2 cut(s)	245, 411
Hpy188III	TCNNGA	4 cut(s)	132, 261, 282, 444
Hpy8I	GTNNAC	2 cut(s)	13, 332
HpyAV	CCTTC	2 cut(s)	285, 365
HpyCH4IV	ACGT	2 cut(s)	313, 509
HpyCH4V	TGCA	3 cut(s)	18, 66, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 434, 467
HpyF3I	CTNAG	2 cut(s)	383, 450
HpySE526I	ACGT	2 cut(s)	313, 509
Hsp92II	CATG	3 cut(s)	47, 528, 569
HspAI	GCGC	2 cut(s)	120, 461
KspAI	GTTAAC	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	414, 503
LpnPI	CCDG	6 cut(s)	34, 196, 268, 295, 442, 457
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	2 cut(s)	53, 308
MaeI	CTAG	4 cut(s)	39, 57, 438, 471
MaeII	ACGT	2 cut(s)	313, 509
MalI	GATC	2 cut(s)	416, 505
MboI	GATC	2 cut(s)	414, 503
MboII	GAAGA	2 cut(s)	83, 99
MfeI	CAATTG	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	5 cut(s)	82, 127, 226, 335, 341
MnlI	CCTC	6 cut(s)	21, 123, 128, 239, 405, 445
MseI	TTAA	1 cut(s)	331
MunI	CAATTG	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	53, 434, 467
NdeII	GATC	2 cut(s)	414, 503
NheI	GCTAGC	1 cut(s)	470
NlaIII	CATG	3 cut(s)	47, 528, 569
PaqCI	CACCTGC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	240, 562
PkrI	GCNGC	1 cut(s)	500
Ppu21I	YACGTR	2 cut(s)	314, 510
PspFI	CCCAGC	1 cut(s)	3
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	1 cut(s)	499
Sau3AI	GATC	2 cut(s)	414, 503
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	53, 308
Sse9I	AATT	5 cut(s)	82, 127, 226, 335, 341
SspMI	CTAG	4 cut(s)	39, 57, 438, 471
TaiI	ACGT	2 cut(s)	316, 512
TasI	AATT	5 cut(s)	82, 127, 226, 335, 341
TfiI	GAWTC	2 cut(s)	240, 562
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	1 cut(s)	122
TseI	GCWGC	1 cut(s)	498
TspDTI	ATGAA	3 cut(s)	193, 224, 304
TspRI	CASTG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	4 cut(s)	39, 57, 438, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.