FvH4_1g06890

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000432
Physical Location & Seq
Reverse (-)
3643800 .. 3646638
2839 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06890.t1

Sequence Viewer

Length: 813 bp
ATGGAGCACACCGCAGGAAGCAAAAAGGAATTGCCTGATCCAGACTTGTTGCAAGACGATGAGGAATCACAAAAGAATTCTTGTGCAGTGAGAGCAAATGAAAACACCAGAAAGAGGCATCCGCTTACCGATAAACCTTTATTGCAGACCGAGGAATTATACGAGTATGTAATGAAGACTGGAGTGTACCCAAGAGAACCAAATCCTCTCAAGGAAATAAGGATTGCTTCTGCAACTCACCCTATGGCTTACATAGGTACCGCACCTGATGCAGGTCAGCTGATAGCCATTCTCCTGAAACTTGCGAACAGCAAAAACACAATTGAAATTGGAGTTTTTACCGGATACTCTCTTCTCCTCACGGCTCTTACGATTCCTGATGATGGCAAGATTACAGCCATAGACATCGACCGAAAAGCATATGAAATAGGGTTGCCGATCATCACCAAAGCTGGTGTGGAACACAAAATTGACTTCATTGAGTCCCCAGCTCTGCCTATTTTGGACAAACTCTTAGAAAACCCAGAGAAGGAAGGGAGCTTCGACTTTGCTTTTGTTGATGCAGACAAGAACAACTACTGGAACTACCACAAAAGGCTAATGAAACTGATCAAGGTTGGTGGATTTGTTGTCTATGATAATACACTCTGGGGAGGGACAGTTGCTTTGCCTGAAGAGGATGTTCCAGAGCCTCTAAGGGAACGAAGGCTATTCATAATTGAGTTTAACAAAATGGTTTCTGCTGACCCTGGCGTCGAAATGTCCCTAGTTCCATTGGGTGATGGGAGCACAATTTGCAGGCGCATTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

271

Amino Acids

30.19

Weight (kDa)

5.12

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 66 - 269 1.7e-73 O-methyltransferase
Methyltransf_24 PF13578 108 - 214 4.1e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 752
Acc36I ACCTGC 1 cut(s) 263
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 3 cut(s) 12, 122, 261
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 693
AcyI GRCGYC 1 cut(s) 753
AfaI GTAC 2 cut(s) 188, 259
AfiI CCNNNNNNNGG 4 cut(s) 114, 272, 383, 529
AgsI TTSAA 1 cut(s) 326
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 4 cut(s) 280, 452, 491, 540
AluI AGCT 4 cut(s) 280, 452, 491, 540
Alw21I GWGCWC 2 cut(s) 9, 791
AlwI GGATC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 76
ArsI GACNNNNNNTTYG 4 cut(s) 536, 568, 649, 681
Asp718I GGTACC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 804
AsuHPI GGTGA 3 cut(s) 230, 436, 791
BaeI ACNNNNGTAYC 2 cut(s) 241, 274
BanI GGYRCC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 9, 791
BccI CCATC 2 cut(s) 377, 776
BceAI ACGGC 1 cut(s) 378
BciT130I CCWGG 1 cut(s) 750
BciVI GTATCC 1 cut(s) 338
BclI TGATCA 1 cut(s) 609
BfaI CTAG 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 263
BfuI GTATCC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 750
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 3 cut(s) 127, 259, 550
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 753
BsaJI CCNNGG 2 cut(s) 150, 748
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 272, 383, 529
Bse1I ACTGG 2 cut(s) 184, 584
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 2 cut(s) 150, 748
BseGI GGATG 2 cut(s) 118, 685
BseLI CCNNNNNNNGG 4 cut(s) 114, 272, 383, 529
BseNI ACTGG 2 cut(s) 184, 584
BseRI GAGGAG 1 cut(s) 347
BseYI CCCAGC 1 cut(s) 487
BsgI GTGCAG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 257
BsiEI CGRYCG 1 cut(s) 412
BsiHKAI GWGCWC 2 cut(s) 9, 791
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 3 cut(s) 469, 670, 748
BslI CCNNNNNNNGG 4 cut(s) 114, 272, 383, 529
BsmFI GGGAC 3 cut(s) 469, 670, 748
Bsp1286I GDGCHC 2 cut(s) 9, 791
Bsp143I GATC 3 cut(s) 37, 438, 609
BspACI CCGC 3 cut(s) 12, 122, 261
BspLI GGNNCC 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 263
BspPI GGATC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 257
BsrI ACTGG 2 cut(s) 184, 584
BssECI CCNNGG 2 cut(s) 150, 748
BssMI GATC 3 cut(s) 37, 438, 609
BssNI GRCGYC 1 cut(s) 753
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 2 cut(s) 357, 669
BstACI GRCGYC 1 cut(s) 753
BstAPI GCANNNNNTGC 2 cut(s) 269, 795
BstC8I GCNNGC 1 cut(s) 800
BstDEI CTNAG 2 cut(s) 514, 695
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 118, 685
BstHHI GCGC 1 cut(s) 804
BstKTI GATC 3 cut(s) 40, 441, 612
BstMBI GATC 3 cut(s) 37, 438, 609
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 3 cut(s) 92, 269, 795
BstNI CCWGG 1 cut(s) 750
BstSCI CCNGG 1 cut(s) 748
BstV2I GAAGAC 1 cut(s) 182
BsuI GTATCC 1 cut(s) 338
BtsCI GGATG 2 cut(s) 118, 685
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 800
CfoI GCGC 1 cut(s) 804
CseI GACGC 1 cut(s) 742
Csp6I GTAC 2 cut(s) 187, 258
CspCI CAANNNNNGTGG 2 cut(s) 601, 636
CviQI GTAC 2 cut(s) 187, 258
DdeI CTNAG 2 cut(s) 514, 695
DpnI GATC 3 cut(s) 39, 440, 611
DpnII GATC 3 cut(s) 37, 438, 609
DrdI GACNNNNNNGTC 1 cut(s) 752
DseDI GACNNNNNNGTC 1 cut(s) 752
Eam1104I CTCTTC 2 cut(s) 357, 669
EarI CTCTTC 2 cut(s) 357, 669
Eco57I CTGAAG 1 cut(s) 693
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 748
FaiI YATR 9 cut(s) 160, 168, 245, 254, 401, 421, 423, 636, 716
FalI AAGNNNNNCTT 2 cut(s) 211, 243
FaqI GGGAC 3 cut(s) 469, 670, 748
FauNDI CATATG 1 cut(s) 421
FbaI TGATCA 1 cut(s) 609
FokI GGATG 2 cut(s) 105, 692
FspBI CTAG 1 cut(s) 767
GlaI GCGC 1 cut(s) 803
GsaI CCCAGC 1 cut(s) 491
GsuI CTGGAG 1 cut(s) 201
HapII CCGG 1 cut(s) 342
HgaI GACGC 1 cut(s) 742
HhaI GCGC 1 cut(s) 804
Hin1I GRCGYC 1 cut(s) 753
Hin6I GCGC 1 cut(s) 802
HinP1I GCGC 1 cut(s) 802
HinfI GANTC 3 cut(s) 65, 373, 482
HpaII CCGG 1 cut(s) 342
HphI GGTGA 3 cut(s) 230, 436, 791
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 4 cut(s) 41, 295, 377, 686
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 758
HpyAV CCTTC 3 cut(s) 523, 527, 699
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4V TGCA 7 cut(s) 52, 86, 145, 233, 272, 563, 798
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 269, 795
HpyF3I CTNAG 2 cut(s) 514, 695
Hsp92I GRCGYC 1 cut(s) 753
HspAI GCGC 1 cut(s) 802
KpnI GGTACC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 3 cut(s) 37, 438, 609
LmnI GCTCC 3 cut(s) 4, 537, 786
LweI GCATC 3 cut(s) 127, 259, 550
MaeI CTAG 1 cut(s) 767
MalI GATC 3 cut(s) 39, 440, 611
MboI GATC 3 cut(s) 37, 438, 609
MboII GAAGA 3 cut(s) 187, 344, 686
MfeI CAATTG 1 cut(s) 321
MhlI GDGCHC 2 cut(s) 9, 791
MluCI AATT 8 cut(s) 29, 76, 155, 321, 327, 468, 717, 792
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 8 cut(s) 55, 108, 145, 216, 368, 647, 670, 702
MseI TTAA 1 cut(s) 726
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 750
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 3 cut(s) 92, 269, 795
NdeI CATATG 1 cut(s) 421
NdeII GATC 3 cut(s) 37, 438, 609
NlaIV GGNNCC 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PfeI GAWTC 2 cut(s) 65, 373
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 2 cut(s) 188, 259
RsaNI GTAC 2 cut(s) 187, 258
SaqAI TTAA 1 cut(s) 726
Sau3AI GATC 3 cut(s) 37, 438, 609
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 2 cut(s) 9, 791
SetI ASST 9 cut(s) 139, 259, 268, 277, 282, 454, 493, 542, 618
SfaNI GCATC 3 cut(s) 127, 259, 550
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 8 cut(s) 29, 76, 155, 321, 327, 468, 717, 792
SsiI CCGC 3 cut(s) 12, 122, 261
SspMI CTAG 1 cut(s) 767
StyD4I CCNGG 1 cut(s) 748
TaaI ACNGT 1 cut(s) 661
TaqI TCGA 3 cut(s) 408, 543, 756
TaqII GACCGA 2 cut(s) 164, 426
TasI AATT 8 cut(s) 29, 76, 155, 321, 327, 468, 717, 792
TfiI GAWTC 2 cut(s) 65, 373
Tru1I TTAA 1 cut(s) 726
Tru9I TTAA 1 cut(s) 726
TscAI CASTG 1 cut(s) 93
TspDTI ATGAA 6 cut(s) 114, 188, 438, 466, 617, 703
TspRI CASTG 1 cut(s) 93
XagI CCTNNNNNAGG 1 cut(s) 270
XapI RAATTY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XspI CTAG 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.