FvH4_1g14010

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000432
Physical Location & Seq
Reverse (-)
7724985 .. 7727339
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14010.t2

Sequence Viewer

Length: 660 bp
ATGATACAAGGAATATGGAGAACACAGCAGGAAGCAAAAAGTTTCTGCCTAATCCAATCCTGCTGCAAGATGAGGAATTACACAAGTGCTTTCTTTGGGACGGCACCTGATGCAGGTCAGCTAATGGCCATGCTCTTGAAACTTGTGAATGCAAAGAAGACGATTGAAGTTGGAGTTTTTACTGGATACTCTCTCCTCCTTACGGCTCTCACTATCCCTGACGACGGCAAGATTACGGCCATAGATAGAGATCGTAAAACATACGAAATAGGTCTCCCAATCATACAAAAAGCCGGAGTTGAGCACAAAATTGACTACATTGAATCGGCGGCGCTGCCTGTCCTTGACAATCTCTTGGGAGAACCAAAGAATGAGGGTGATTTCGATTTTGCCTTTGTCGATGCTGACAAAGATAACTATTGGAATTATCATGAGAGGTTGATGAAACTGGTGAAGATTGGTGGGATTGTTATGTATGATAACACACTGTGGGGAGGGGCAGTGGCTAAGCCTGAAGAAGCTGTTCCCGAGTCCAAAAGGCGGTTGATGCGAGCAACAATTGAGTTTAACAGGTCAGTTTCGGCTGACCCTCGAGTCGAGATCGCTCATGCTTCTGTAGGAGATGGAATCACCATATGCAGACGCATTTGCTATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

220

Amino Acids

24.5

Weight (kDa)

5.99

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 28 - 238 1.8e-77 O-methyltransferase
Methyltransf_24 PF13578 77 - 183 9.2e-08 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
Acc36I ACCTGC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 103
AciI CCGC 2 cut(s) 329, 541
AcoI YGGCCR 2 cut(s) 126, 237
AcuI CTGAAG 1 cut(s) 534
AdeI CACNNNGTG 1 cut(s) 489
AfiI CCNNNNNNNGG 4 cut(s) 113, 202, 224, 540
AgsI TTSAA 3 cut(s) 139, 167, 323
AluBI AGCT 2 cut(s) 121, 521
AluI AGCT 2 cut(s) 121, 521
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 278
Ama87I CYCGRG 2 cut(s) 527, 591
AoxI GGCC 2 cut(s) 126, 237
ApeKI GCWGC 2 cut(s) 63, 334
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 389, 463, 622
AvaI CYCGRG 2 cut(s) 527, 591
BalI TGGCCA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 50, 321
BccI CCATC 1 cut(s) 617
BceAI ACGGC 4 cut(s) 117, 219, 241, 252
BciVI GTATCC 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 104
BfuI GTATCC 1 cut(s) 179
BisI GCNGC 3 cut(s) 64, 330, 335
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 3 cut(s) 65, 331, 336
BmeT110I CYCGRG 2 cut(s) 527, 591
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 3 cut(s) 100, 391, 537
BpiI GAAGAC 1 cut(s) 164
Bpu1102I GCTNAGC 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 202, 224, 540
Bse1I ACTGG 2 cut(s) 187, 453
Bse8I GATNNNNATC 1 cut(s) 249
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 4 cut(s) 113, 202, 224, 540
BseNI ACTGG 2 cut(s) 187, 453
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 50, 321
BshFI GGCC 2 cut(s) 128, 239
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 2 cut(s) 527, 591
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 4 cut(s) 113, 202, 224, 540
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 112
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 2 cut(s) 128, 239
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 2 cut(s) 527, 591
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 2 cut(s) 250, 600
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 2 cut(s) 329, 541
BspANI GGCC 2 cut(s) 128, 239
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 278
BsrI ACTGG 2 cut(s) 187, 453
BssMI GATC 2 cut(s) 250, 600
Bst4CI ACNGT 1 cut(s) 489
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 552
BstDEI CTNAG 1 cut(s) 507
BstENI CCTNNNNNAGG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 253, 603
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 250, 600
BstMWI GCNNNNNNNGC 2 cut(s) 110, 547
BstSFI CTRYAG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 50, 321
BstV2I GAAGAC 1 cut(s) 164
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 2 cut(s) 128, 239
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 485, 507
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 552
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 334
CseI GACGC 1 cut(s) 651
CviAII CATG 3 cut(s) 130, 431, 608
CviJI RGCY 9 cut(s) 121, 128, 206, 239, 293, 506, 511, 521, 584
CviKI_1 RGCY 9 cut(s) 121, 128, 206, 239, 293, 506, 511, 521, 584
DdeI CTNAG 1 cut(s) 507
DpnI GATC 2 cut(s) 252, 602
DpnII GATC 2 cut(s) 250, 600
DraIII CACNNNGTG 1 cut(s) 489
DrdI GACNNNNNNGTC 1 cut(s) 593
DseDI GACNNNNNNGTC 1 cut(s) 593
EaeI YGGCCR 2 cut(s) 126, 237
Eco31I GGTCTC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 534
Eco88I CYCGRG 2 cut(s) 527, 591
EcoNI CCTNNNNNAGG 1 cut(s) 111
FaeI CATG 3 cut(s) 133, 434, 611
FaqI GGGAC 1 cut(s) 112
FatI CATG 3 cut(s) 129, 430, 607
FauNDI CATATG 1 cut(s) 635
Fnu4HI GCNGC 3 cut(s) 64, 330, 335
Fsp4HI GCNGC 3 cut(s) 64, 330, 335
GlaI GCGC 1 cut(s) 333
GluI GCNGC 3 cut(s) 64, 330, 335
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 2 cut(s) 128, 239
HapII CCGG 1 cut(s) 294
HgaI GACGC 1 cut(s) 651
HhaI GCGC 1 cut(s) 334
Hin1II CATG 3 cut(s) 133, 434, 611
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 4 cut(s) 323, 530, 594, 627
HpaII CCGG 1 cut(s) 294
HphI GGTGA 3 cut(s) 389, 463, 622
Hpy188III TCNNGA 4 cut(s) 136, 431, 527, 598
Hpy99I CGWCG 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 4 cut(s) 66, 113, 152, 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 547
HpyF3I CTNAG 1 cut(s) 507
Hsp92II CATG 3 cut(s) 133, 434, 611
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 2 cut(s) 250, 600
Lsp1109I GCAGC 2 cut(s) 50, 321
LweI GCATC 3 cut(s) 100, 391, 537
MalI GATC 2 cut(s) 252, 602
MboI GATC 2 cut(s) 250, 600
MboII GAAGA 3 cut(s) 169, 466, 527
MfeI CAATTG 1 cut(s) 558
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 4 cut(s) 76, 309, 424, 558
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 2 cut(s) 539, 603
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 6 cut(s) 66, 206, 367, 429, 488, 600
Mox20I TGGCCA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 522
MscI TGGCCA 1 cut(s) 128
MseI TTAA 1 cut(s) 567
Msp20I TGGCCA 1 cut(s) 128
MspI CCGG 1 cut(s) 294
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 110, 547
NdeI CATATG 1 cut(s) 635
NdeII GATC 2 cut(s) 250, 600
NlaIII CATG 3 cut(s) 133, 434, 611
NlaIV GGNNCC 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 591
PagI TCATGA 1 cut(s) 430
PctI GAATGC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 323, 627
PkrI GCNGC 3 cut(s) 65, 331, 336
PleI GAGTC 2 cut(s) 538, 602
PpsI GAGTC 2 cut(s) 538, 602
PspN4I GGNNCC 1 cut(s) 105
PspXI VCTCGAGB 1 cut(s) 591
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 3 cut(s) 64, 330, 335
Sau3AI GATC 2 cut(s) 250, 600
SchI GAGTC 2 cut(s) 539, 603
SduI GDGCHC 1 cut(s) 306
SetI ASST 7 cut(s) 109, 118, 123, 274, 440, 523, 575
SfaNI GCATC 3 cut(s) 100, 391, 537
SfcI CTRYAG 1 cut(s) 615
Sfr274I CTCGAG 1 cut(s) 591
SlaI CTCGAG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
Sse9I AATT 4 cut(s) 76, 309, 424, 558
SsiI CCGC 2 cut(s) 329, 541
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 4 cut(s) 384, 399, 592, 597
TasI AATT 4 cut(s) 76, 309, 424, 558
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 2 cut(s) 323, 627
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 2 cut(s) 492, 507
TseI GCWGC 2 cut(s) 63, 334
TspDTI ATGAA 1 cut(s) 458
TspRI CASTG 2 cut(s) 492, 507
XagI CCTNNNNNAGG 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 591
XmnI GAANNNNTTC 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.