Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

5705416 .. 5706749

Gene Structure 1334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016330

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAATCAAGAGGGATTAAGATAGCAAAGGGCGTGTTGCAGAGTGATGAATTATCTCAATACATCTTGGAGACTAGTGTGTATCCACGTGAACCAGCGCCTCTCAAGGAGCTAAGGGATGCCACTGCCAGCCACCCTCGGGCTGGATTGGCTACTGCACCAGATGCAGCTCAGTTACTAGCCATGCTGTTGAAGCTAGTAGATGCAAAGAAGACAATTGAAATTGGAGTTTTCACAGGATATTCTCTTCTCCTCACGGCGCTTACAATTCCGGAGGATGGTAAGATTGTAGCCATAGATATAAATCATGAGACATATGATCAAATAGGCTTGCCGGTCATAAAGAAAGCTGGTGTTCAGCACAAAATTGACTTCATTGAATCCGAGGCTGTACCAGTTCTTGATAAGCTATTGGAAAATCCTGAAAATGAAAGCAGTTTCGACTTTGCTTATGTGGATGCCGACAAGGTTAACAATTGGAATTACCACGAGAGACTACTGAAACTGTTGAAGGTGGGTGGCTTAGTTGTCTATGACAACACTCTCTGCAGAGGATCAGTCGCGTTGCCTGATGAGTTAGTTCCAGAGCCGAGGAAACAGCGCAGACAGCTAGCCATTGAGCATAACAAGACACTTGCAGCCGATCCACGTATCCAAATCTCTCATGCTTCTGTGGGTGATGGGATAATGATTTGTCGCAGAATCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

237

Amino Acids

26.11

Weight (kDa)

5.72

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 235	1.1e-72	O-methyltransferase
Methyltransf_24	PF13578	73 - 180	3.4e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	563
AccIII	TCCGGA	1 cut(s)	271
AclWI	GGATC	2 cut(s)	562, 638
AcvI	CACGTG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	3 cut(s)	139, 143, 278
AgsI	TTSAA	4 cut(s)	193, 221, 380, 511
AhlI	ACTAGT	1 cut(s)	74
AluBI	AGCT	6 cut(s)	112, 170, 196, 350, 409, 610
AluI	AGCT	6 cut(s)	112, 170, 196, 350, 409, 610
Alw26I	GTCTC	3 cut(s)	65, 305, 487
AlwI	GGATC	2 cut(s)	562, 638
Ama87I	CYCGRG	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	167, 638
AspLEI	GCGC	3 cut(s)	100, 262, 603
AsuHPI	GGTGA	1 cut(s)	689
AsuNHI	GCTAGC	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	138
BauI	CACGAG	1 cut(s)	488
BbrPI	CACGTG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	179, 650
BccI	CCATC	2 cut(s)	272, 674
BceAI	ACGGC	1 cut(s)	273
BciVI	GTATCC	2 cut(s)	93, 662
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	3 cut(s)	65, 305, 487
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	4 cut(s)	75, 179, 197, 611
BfmI	CTRYAG	1 cut(s)	547
BfoI	RGCGCY	2 cut(s)	101, 263
BfuI	GTATCC	2 cut(s)	93, 662
BisI	GCNGC	2 cut(s)	168, 639
BlsI	GCNGC	2 cut(s)	169, 640
BmeT110I	CYCGRG	1 cut(s)	138
BmsI	GCATC	4 cut(s)	109, 154, 193, 448
BmtI	GCTAGC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	89
BsaAI	YACGTR	2 cut(s)	89, 650
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	137, 384, 590
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 143, 278
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	395
Bse8I	GATNNNNATC	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	271
BseDI	CCNNGG	3 cut(s)	137, 384, 590
BseGI	GGATG	3 cut(s)	124, 283, 463
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	139, 143, 278
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	179, 650
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	272, 335
BslI	CCNNNNNNNGG	3 cut(s)	139, 143, 278
BsmAI	GTCTC	3 cut(s)	65, 305, 487
BsoBI	CYCGRG	1 cut(s)	138
Bsp13I	TCCGGA	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	319, 554, 643
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	563
BspHI	TCATGA	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	551
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	2 cut(s)	562, 638
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	3 cut(s)	137, 384, 590
BssMI	GATC	3 cut(s)	319, 554, 643
BssSI	CACGAG	1 cut(s)	488
Bst2BI	CACGAG	1 cut(s)	488
Bst4CI	ACNGT	1 cut(s)	507
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBAI	YACGTR	2 cut(s)	89, 650
BstC8I	GCNNGC	3 cut(s)	130, 332, 612
BstDEI	CTNAG	3 cut(s)	113, 171, 523
BstF5I	GGATG	3 cut(s)	124, 283, 463
BstFNI	CGCG	1 cut(s)	563
BstH2I	RGCGCY	2 cut(s)	101, 263
BstHHI	GCGC	3 cut(s)	100, 262, 603
BstKTI	GATC	3 cut(s)	322, 557, 646
BstMAI	GTCTC	3 cut(s)	65, 305, 487
BstMBI	GATC	3 cut(s)	319, 554, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 164, 193, 607
BstSFI	CTRYAG	1 cut(s)	547
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	2 cut(s)	179, 650
BstV2I	GAAGAC	1 cut(s)	218
BsuI	GTATCC	2 cut(s)	93, 662
BtsCI	GGATG	3 cut(s)	124, 283, 463
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	3 cut(s)	130, 332, 612
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	3 cut(s)	100, 262, 603
Cfr10I	RCCGGY	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	3 cut(s)	184, 308, 665
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	3 cut(s)	113, 171, 523
DpnI	GATC	3 cut(s)	321, 556, 645
DpnII	GATC	3 cut(s)	319, 554, 643
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco72I	CACGTG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	138
FaeI	CATG	3 cut(s)	187, 311, 668
FatI	CATG	3 cut(s)	183, 307, 664
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	168, 639
FokI	GGATG	3 cut(s)	131, 290, 470
Fsp4HI	GCNGC	2 cut(s)	168, 639
FspBI	CTAG	4 cut(s)	75, 179, 197, 611
GlaI	GCGC	3 cut(s)	99, 261, 602
GluI	GCNGC	2 cut(s)	168, 639
HaeII	RGCGCY	2 cut(s)	101, 263
HapII	CCGG	2 cut(s)	272, 335
HhaI	GCGC	3 cut(s)	100, 262, 603
Hin1II	CATG	3 cut(s)	187, 311, 668
Hin6I	GCGC	3 cut(s)	98, 260, 601
HinP1I	GCGC	3 cut(s)	98, 260, 601
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	3 cut(s)	5, 380, 702
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	2 cut(s)	272, 335
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	2 cut(s)	92, 472
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	6 cut(s)	9, 272, 308, 401, 422, 584
Hpy8I	GTNNAC	2 cut(s)	92, 472
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4IV	ACGT	2 cut(s)	88, 649
HpyCH4V	TGCA	6 cut(s)	40, 158, 167, 206, 549, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 164, 193, 607
HpyF3I	CTNAG	3 cut(s)	113, 171, 523
HpySE526I	ACGT	2 cut(s)	88, 649
Hsp92II	CATG	3 cut(s)	187, 311, 668
HspAI	GCGC	3 cut(s)	98, 260, 601
Kpn2I	TCCGGA	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	319, 554, 643
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	2 cut(s)	179, 650
LweI	GCATC	4 cut(s)	109, 154, 193, 448
MaeI	CTAG	4 cut(s)	75, 179, 197, 611
MaeII	ACGT	2 cut(s)	88, 649
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	321, 556, 645
MboI	GATC	3 cut(s)	319, 554, 643
MboII	GAAGA	2 cut(s)	223, 239
MfeI	CAATTG	2 cut(s)	216, 475
MluCI	AATT	7 cut(s)	50, 216, 222, 267, 366, 475, 481
MnlI	CCTC	8 cut(s)	5, 111, 147, 263, 268, 379, 545, 585
MroI	TCCGGA	1 cut(s)	271
MseI	TTAA	2 cut(s)	18, 471
MspI	CCGG	2 cut(s)	272, 335
MunI	CAATTG	2 cut(s)	216, 475
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	4 cut(s)	149, 164, 193, 607
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	319, 554, 643
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	3 cut(s)	187, 311, 668
NmeAIII	GCCGAG	1 cut(s)	615
PagI	TCATGA	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	5, 380, 702
PkrI	GCNGC	2 cut(s)	169, 640
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
Ppu21I	YACGTR	2 cut(s)	89, 650
PspCI	CACGTG	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	551
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	18, 471
SatI	GCNGC	2 cut(s)	168, 639
Sau3AI	GATC	3 cut(s)	319, 554, 643
SfaNI	GCATC	4 cut(s)	109, 154, 193, 448
SfcI	CTRYAG	1 cut(s)	547
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	7 cut(s)	50, 216, 222, 267, 366, 475, 481
SspMI	CTAG	4 cut(s)	75, 179, 197, 611
TaaI	ACNGT	1 cut(s)	507
TaiI	ACGT	2 cut(s)	91, 652
TaqI	TCGA	1 cut(s)	441
TasI	AATT	7 cut(s)	50, 216, 222, 267, 366, 475, 481
TfiI	GAWTC	3 cut(s)	5, 380, 702
Tru1I	TTAA	2 cut(s)	18, 471
Tru9I	TTAA	2 cut(s)	18, 471
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	2 cut(s)	167, 638
TspDTI	ATGAA	3 cut(s)	63, 364, 444
TspRI	CASTG	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	4 cut(s)	75, 179, 197, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.