Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

17871472 .. 17873066

Gene Structure 1595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1088100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCCGCCAATGGAGAGGAGCAGCAAACTCAGGCAGGAAGGCACCAAGAGGTTGGCCACAAGAGCCTTCTCCAAAGTGATGCTCTTTACCAGACAAGTGTGTACCCAAGGGAGCCTGAATCCATGAAGGAGCTCAGAGAAGTGACTGCAAAGCATCCATGGAACATCATGACCACATCAGCTGACGAAGGCCAATTCTTGAACATGCTTCTCAAGTTGATCAATGCCAAAAACACCATGGAGATTGGAGTCTACACTGGCTACTCCCTCCTTGCCACTGCCCTTGCCATTCCTGATGATGGAAAGATCTTGGCCATGGACATAAACAAAGAAAATTATGAATTGGGTCTTCCGATAATCGAAAAGGCCGGTGTTGCCCACAAGATCGACTTCAGAGAAGGCCCCGCCCTCCCAATGCTCGACTTATTGATCGAAAATAAGAAGAATCATGGGTCGTACGATTTCATCTTCGTGGACGCTGACAAAGACAACTACATCAACTACCACAAGAGGCTGATTGATTTGGTCAAGGTTGGGGGTCTCATTGGCTACGACAACACCCTATGGAATGGGTCTGTGGTCGCGCCCCCTGATGCTCCACTCCGCAAGTACGTCAGGTACTACCGGGACTTCGTGCTCGAGCTCAACAAGGCACTCGCTGCTGACCCTAGGATCGAGATTTGCATGCTTCCTGTTGGTGATGGCATCACTCTCTGCCGTCGGATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019748 GO:0032259 GO:0042221 GO:0042409 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

244

Amino Acids

27.34

Weight (kDa)

5.72

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	32 - 242	2.2e-96	O-methyltransferase
Methyltransf_24	PF13578	80 - 186	1.1e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	584
AciI	CCGC	3 cut(s)	6, 405, 604
AclWI	GGATC	2 cut(s)	680, 731
AcoI	YGGCCR	3 cut(s)	3, 55, 312
AcuI	CTGAAG	1 cut(s)	376
AfaI	GTAC	4 cut(s)	104, 458, 611, 620
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	202
AluBI	AGCT	3 cut(s)	133, 182, 643
AluI	AGCT	3 cut(s)	133, 182, 643
Alw21I	GWGCWC	3 cut(s)	135, 639, 645
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	680, 731
Ama87I	CYCGRG	1 cut(s)	638
AoxI	GGCC	6 cut(s)	3, 55, 190, 312, 366, 400
ApeKI	GCWGC	2 cut(s)	22, 659
AspA2I	CCTAGG	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	1 cut(s)	710
AvaI	CYCGRG	1 cut(s)	638
AvrII	CCTAGG	1 cut(s)	668
BalI	TGGCCA	2 cut(s)	57, 314
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	2 cut(s)	135, 645
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	3 cut(s)	135, 639, 645
BbvI	GCAGC	2 cut(s)	34, 646
BccI	CCATC	2 cut(s)	293, 695
BceAI	ACGGC	1 cut(s)	702
BclI	TGATCA	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	1 cut(s)	669
BglII	AGATCT	1 cut(s)	306
BisI	GCNGC	3 cut(s)	6, 23, 660
BlnI	CCTAGG	1 cut(s)	668
BlsI	GCNGC	3 cut(s)	7, 24, 661
Bme1390I	CCNGG	1 cut(s)	626
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	44, 114, 403
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	4 cut(s)	70, 163, 583, 714
BpiI	GAAGAC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	5 cut(s)	107, 158, 237, 315, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse118I	RCCGGY	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	262
BseDI	CCNNGG	5 cut(s)	107, 158, 237, 315, 668
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	44, 148
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	34, 646
Bsh1236I	CGCG	1 cut(s)	584
BshFI	GGCC	6 cut(s)	5, 57, 192, 314, 368, 402
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	3 cut(s)	135, 639, 645
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	369, 625
BsiWI	CGTACG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	6 cut(s)	5, 57, 192, 314, 368, 402
Bso31I	GGTCTC	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	638
Bsp1286I	GDGCHC	3 cut(s)	135, 639, 645
Bsp143I	GATC	6 cut(s)	219, 306, 384, 429, 672, 723
Bsp19I	CCATGG	3 cut(s)	158, 237, 315
BspACI	CCGC	3 cut(s)	6, 405, 604
BspANI	GGCC	6 cut(s)	5, 57, 192, 314, 368, 402
BspCNI	CTCAG	2 cut(s)	43, 147
BspFNI	CGCG	1 cut(s)	584
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	3 cut(s)	44, 114, 403
BspPI	GGATC	2 cut(s)	680, 731
BspT107I	GGYRCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	545
BsrFI	RCCGGY	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	5 cut(s)	107, 158, 237, 315, 668
BssMI	GATC	6 cut(s)	219, 306, 384, 429, 672, 723
BssT1I	CCWWGG	5 cut(s)	107, 158, 237, 315, 668
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	2 cut(s)	30, 134
BstDSI	CCRYGG	3 cut(s)	158, 237, 315
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	6 cut(s)	222, 309, 387, 432, 675, 726
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	6 cut(s)	219, 306, 384, 429, 672, 723
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 374, 659
BstNSI	RCATGY	2 cut(s)	208, 688
BstSCI	CCNGG	1 cut(s)	624
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	2 cut(s)	34, 646
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	306
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	6 cut(s)	5, 57, 192, 314, 368, 402
BtgI	CCRYGG	3 cut(s)	158, 237, 315
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	255, 276
Cac8I	GCNNGC	1 cut(s)	686
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	1 cut(s)	586
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	4 cut(s)	103, 457, 610, 619
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	8 cut(s)	124, 159, 169, 205, 238, 316, 449, 685
CviQI	GTAC	4 cut(s)	103, 457, 610, 619
DdeI	CTNAG	2 cut(s)	30, 134
DpnI	GATC	6 cut(s)	221, 308, 386, 431, 674, 725
DpnII	GATC	6 cut(s)	219, 306, 384, 429, 672, 723
EaeI	YGGCCR	3 cut(s)	3, 55, 312
Ecl136II	GAGCTC	2 cut(s)	133, 643
Eco130I	CCWWGG	5 cut(s)	107, 158, 237, 315, 668
Eco24I	GRGCYC	2 cut(s)	135, 645
Eco31I	GGTCTC	1 cut(s)	545
Eco53kI	GAGCTC	2 cut(s)	133, 643
Eco57I	CTGAAG	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	638
EcoICRI	GAGCTC	2 cut(s)	133, 643
EcoO109I	RGGNCCY	1 cut(s)	401
EcoT14I	CCWWGG	5 cut(s)	107, 158, 237, 315, 668
EcoT38I	GRGCYC	2 cut(s)	135, 645
ErhI	CCWWGG	5 cut(s)	107, 158, 237, 315, 668
FaeI	CATG	8 cut(s)	127, 162, 172, 208, 241, 319, 452, 688
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	8 cut(s)	123, 158, 168, 204, 237, 315, 448, 684
FauI	CCCGC	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	6, 23, 660
FokI	GGATG	1 cut(s)	141
FriOI	GRGCYC	2 cut(s)	135, 645
Fsp4HI	GCNGC	3 cut(s)	6, 23, 660
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	3 cut(s)	6, 23, 660
HaeIII	GGCC	6 cut(s)	5, 57, 192, 314, 368, 402
HapII	CCGG	2 cut(s)	369, 625
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	8 cut(s)	127, 162, 172, 208, 241, 319, 452, 688
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HinfI	GANTC	3 cut(s)	119, 249, 445
HpaII	CCGG	2 cut(s)	369, 625
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	3 cut(s)	103, 253, 475
Hpy188I	TCNGA	4 cut(s)	137, 354, 395, 723
Hpy188III	TCNNGA	4 cut(s)	169, 199, 293, 676
Hpy8I	GTNNAC	3 cut(s)	103, 253, 475
Hpy99I	CGWCG	1 cut(s)	723
HpyAV	CCTTC	5 cut(s)	33, 77, 121, 182, 392
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	2 cut(s)	149, 684
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 374, 659
HpyF3I	CTNAG	2 cut(s)	30, 134
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	8 cut(s)	127, 162, 172, 208, 241, 319, 452, 688
HspAI	GCGC	1 cut(s)	584
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	6 cut(s)	219, 306, 384, 429, 672, 723
LmnI	GCTCC	4 cut(s)	19, 112, 130, 601
Lsp1109I	GCAGC	2 cut(s)	34, 646
LweI	GCATC	4 cut(s)	70, 163, 583, 714
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	6 cut(s)	221, 308, 386, 431, 674, 725
MboI	GATC	6 cut(s)	219, 306, 384, 429, 672, 723
MboII	GAAGA	3 cut(s)	341, 454, 460
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	3 cut(s)	135, 639, 645
MlsI	TGGCCA	2 cut(s)	57, 314
MluCI	AATT	3 cut(s)	194, 334, 341
MluNI	TGGCCA	2 cut(s)	57, 314
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	701
MnlI	CCTC	5 cut(s)	10, 43, 278, 419, 504
Mox20I	TGGCCA	2 cut(s)	57, 314
MscI	TGGCCA	2 cut(s)	57, 314
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	2 cut(s)	57, 314
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	2 cut(s)	369, 625
MspR9I	CCNGG	1 cut(s)	626
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	3 cut(s)	63, 374, 659
NciI	CCSGG	1 cut(s)	626
NcoI	CCATGG	3 cut(s)	158, 237, 315
NdeII	GATC	6 cut(s)	219, 306, 384, 429, 672, 723
NlaIII	CATG	8 cut(s)	127, 162, 172, 208, 241, 319, 452, 688
NlaIV	GGNNCC	3 cut(s)	44, 114, 403
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	2 cut(s)	208, 688
PaeI	GCATGC	1 cut(s)	688
PaeR7I	CTCGAG	1 cut(s)	638
PagI	TCATGA	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	119, 445
Pfl23II	CGTACG	1 cut(s)	456
PkrI	GCNGC	3 cut(s)	7, 24, 661
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp124BI	GAGCTC	2 cut(s)	135, 645
PspLI	CGTACG	1 cut(s)	456
PspN4I	GGNNCC	3 cut(s)	44, 114, 403
PspPI	GGNCC	1 cut(s)	401
PspXI	VCTCGAGB	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	4 cut(s)	104, 458, 611, 620
RsaNI	GTAC	4 cut(s)	103, 457, 610, 619
RseI	CAYNNNNRTG	1 cut(s)	470
SacI	GAGCTC	2 cut(s)	135, 645
SatI	GCNGC	3 cut(s)	6, 23, 660
Sau3AI	GATC	6 cut(s)	219, 306, 384, 429, 672, 723
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	3 cut(s)	135, 639, 645
SetI	ASST	7 cut(s)	54, 135, 184, 534, 615, 620, 645
SfaNI	GCATC	4 cut(s)	70, 163, 583, 714
Sfr274I	CTCGAG	1 cut(s)	638
SlaI	CTCGAG	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	212, 638
SmoI	CTYRAG	2 cut(s)	212, 638
SphI	GCATGC	1 cut(s)	688
Sse9I	AATT	3 cut(s)	194, 334, 341
SsiI	CCGC	3 cut(s)	6, 405, 604
SspMI	CTAG	1 cut(s)	669
SstI	GAGCTC	2 cut(s)	135, 645
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	5 cut(s)	107, 158, 237, 315, 668
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	6 cut(s)	360, 387, 420, 432, 639, 675
TasI	AATT	3 cut(s)	194, 334, 341
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	119, 445
TscAI	CASTG	2 cut(s)	262, 283
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	22, 659
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	140, 354, 454
TspRI	CASTG	2 cut(s)	262, 283
XceI	RCATGY	2 cut(s)	208, 688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	638
XmaJI	CCTAGG	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.