Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

12337940 .. 12339683

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCAGCAAATGGAGAGGAGCAGAAAAGCAGGCACCAGGAAGTTGGCCACAAAAGCCTTCTTCAAAGTGATGCTCTTTACCAGTATATTTTGGAGACTAGTGTGTACCCAAGAGAGCCTGAATCCATGAAGGAGCTCAGAGAGTTGACAGCAAAGCACCCATGGAACATCATGACCACTTCAGCTGATGAAGGTCAATTCTTGAACATGCTTCTCAAGCTCATCAATGCCAAGAACACCATGGAGATTGGTGTCTACACTGGCTACTCGCTCTTGGCCACAGCCCTCGCTCTCCCTGAAGATGGGAAGATCTTGGCCATGGACATCAACAAAGAAAACTATGAATTGGGTCTGCCAGTCATCGAAAAAGCTGGTGTTGCCCATAAGATTGACTTCAGGGAAGGCCCTGCCCTCCCCGTTCTTGACCATATGATCGAAGATGAGAAGAACCATGGATCGTTTGACTTCATCTTCGTTGACGCGGACAAGGACAACTATATCAACTACCACAAGAGGCTGATCGACCTGGTCAAGGTCGGAGGCCTGATCGGCTACGACAACACCCTATGGAACGGCTCTGTGGTGGCACCACCTGATGCTCCTCTCCGCAAGTACGTCAGGTACTACAGGGACTTTGTGATCGAGCTCAACAAGGCTCTTGCTGCAGACCCCAGAATTGAGATTTGCATGCTTCCAGTTGGGGATGGCATCACCCTCTGCCGTCGGATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019748 GO:0032259 GO:0042221 GO:0042409 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

244

Amino Acids

27.59

Weight (kDa)

5.42

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	32 - 243	5.6e-99	O-methyltransferase
Methyltransf_24	PF13578	81 - 187	9.5e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	33, 586
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	482
AciI	CCGC	2 cut(s)	482, 607
AclWI	GGATC	1 cut(s)	463
AcoI	YGGCCR	3 cut(s)	46, 276, 315
AcuI	CTGAAG	3 cut(s)	165, 318, 379
AfaI	GTAC	3 cut(s)	107, 614, 623
AfiI	CCNNNNNNNGG	2 cut(s)	302, 532
AgsI	TTSAA	2 cut(s)	65, 205
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	36, 525
AluBI	AGCT	5 cut(s)	136, 185, 220, 371, 646
AluI	AGCT	5 cut(s)	136, 185, 220, 371, 646
Alw21I	GWGCWC	2 cut(s)	138, 648
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	5 cut(s)	46, 276, 315, 403, 541
ApeKI	GCWGC	2 cut(s)	5, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	703
BalI	TGGCCA	3 cut(s)	48, 278, 317
BanI	GGYRCC	2 cut(s)	33, 586
BanII	GRGCYC	2 cut(s)	138, 648
Bbv12I	GWGCWC	2 cut(s)	138, 648
BbvI	GCAGC	2 cut(s)	17, 649
BccI	CCATC	2 cut(s)	296, 698
BceAI	ACGGC	2 cut(s)	589, 705
BciT130I	CCWGG	2 cut(s)	38, 527
BcoDI	GTCTC	1 cut(s)	89
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	2 cut(s)	625, 663
BglI	GCCNNNNNGGC	1 cut(s)	549
BglII	AGATCT	1 cut(s)	309
BisI	GCNGC	2 cut(s)	6, 663
BlsI	GCNGC	2 cut(s)	7, 664
Bme1390I	CCNGG	2 cut(s)	38, 527
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	2 cut(s)	35, 588
BmrFI	CCNGG	2 cut(s)	38, 527
BmsI	GCATC	3 cut(s)	61, 586, 717
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	4 cut(s)	161, 240, 318, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 532
Bse1I	ACTGG	4 cut(s)	82, 265, 356, 695
BseBI	CCWGG	2 cut(s)	38, 527
BseDI	CCNNGG	4 cut(s)	161, 240, 318, 451
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	302, 532
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	4 cut(s)	82, 265, 356, 695
BseRI	GAGGAG	2 cut(s)	32, 591
BseXI	GCAGC	2 cut(s)	17, 649
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	5 cut(s)	48, 278, 317, 405, 543
BshNI	GGYRCC	2 cut(s)	33, 586
BsiHKAI	GWGCWC	2 cut(s)	138, 648
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	2 cut(s)	302, 532
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	5 cut(s)	48, 278, 317, 405, 543
Bsp1286I	GDGCHC	2 cut(s)	138, 648
Bsp143I	GATC	6 cut(s)	309, 432, 455, 519, 546, 639
Bsp19I	CCATGG	4 cut(s)	161, 240, 318, 451
BspACI	CCGC	2 cut(s)	482, 607
BspANI	GGCC	5 cut(s)	48, 278, 317, 405, 543
BspCNI	CTCAG	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	482
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	35, 588
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	1 cut(s)	463
BspT107I	GGYRCC	2 cut(s)	33, 586
BsrI	ACTGG	4 cut(s)	82, 265, 356, 695
BssECI	CCNNGG	4 cut(s)	161, 240, 318, 451
BssMI	GATC	6 cut(s)	309, 432, 455, 519, 546, 639
BssT1I	CCWWGG	4 cut(s)	161, 240, 318, 451
Bst2UI	CCWGG	2 cut(s)	38, 527
BstC8I	GCNNGC	2 cut(s)	32, 689
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	4 cut(s)	161, 240, 318, 451
BstENI	CCTNNNNNAGG	1 cut(s)	530
BstF5I	GGATG	1 cut(s)	709
BstFNI	CGCG	1 cut(s)	482
BstKTI	GATC	6 cut(s)	312, 435, 458, 522, 549, 642
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	6 cut(s)	309, 432, 455, 519, 546, 639
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 217, 377, 549, 662
BstNI	CCWGG	2 cut(s)	38, 527
BstNSI	RCATGY	2 cut(s)	211, 691
BstSCI	CCNGG	2 cut(s)	36, 525
BstSFI	CTRYAG	2 cut(s)	625, 663
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	17, 649
BstX2I	RGATCY	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	5 cut(s)	48, 278, 317, 405, 543
BtgI	CCRYGG	4 cut(s)	161, 240, 318, 451
BtsCI	GGATG	1 cut(s)	709
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	32, 689
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	404
CseI	GACGC	1 cut(s)	488
CsiI	ACCWGGT	1 cut(s)	525
Csp6I	GTAC	3 cut(s)	106, 613, 622
CviAII	CATG	8 cut(s)	127, 162, 172, 208, 241, 319, 452, 688
CviQI	GTAC	3 cut(s)	106, 613, 622
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	6 cut(s)	311, 434, 457, 521, 548, 641
DpnII	GATC	6 cut(s)	309, 432, 455, 519, 546, 639
EaeI	YGGCCR	3 cut(s)	46, 276, 315
Ecl136II	GAGCTC	2 cut(s)	136, 646
Eco130I	CCWWGG	4 cut(s)	161, 240, 318, 451
Eco147I	AGGCCT	1 cut(s)	543
Eco24I	GRGCYC	2 cut(s)	138, 648
Eco53kI	GAGCTC	2 cut(s)	136, 646
Eco57I	CTGAAG	3 cut(s)	165, 318, 379
EcoICRI	GAGCTC	2 cut(s)	136, 646
EcoNI	CCTNNNNNAGG	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	36, 525
EcoT14I	CCWWGG	4 cut(s)	161, 240, 318, 451
EcoT38I	GRGCYC	2 cut(s)	138, 648
ErhI	CCWWGG	4 cut(s)	161, 240, 318, 451
FaeI	CATG	8 cut(s)	130, 165, 175, 211, 244, 322, 455, 691
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	8 cut(s)	126, 161, 171, 207, 240, 318, 451, 687
FauNDI	CATATG	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	6, 663
FokI	GGATG	1 cut(s)	716
FriOI	GRGCYC	2 cut(s)	138, 648
Fsp4HI	GCNGC	2 cut(s)	6, 663
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	2 cut(s)	6, 663
HaeIII	GGCC	5 cut(s)	48, 278, 317, 405, 543
HgaI	GACGC	1 cut(s)	488
Hin1II	CATG	8 cut(s)	130, 165, 175, 211, 244, 322, 455, 691
HincII	GTYRAC	2 cut(s)	147, 478
HindII	GTYRAC	2 cut(s)	147, 478
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	4 cut(s)	106, 147, 256, 478
Hpy188I	TCNGA	3 cut(s)	140, 539, 726
Hpy188III	TCNNGA	3 cut(s)	172, 202, 422
Hpy8I	GTNNAC	4 cut(s)	106, 147, 256, 478
Hpy99I	CGWCG	1 cut(s)	726
HpyAV	CCTTC	4 cut(s)	68, 124, 185, 395
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	2 cut(s)	665, 687
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 217, 377, 549, 662
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	8 cut(s)	130, 165, 175, 211, 244, 322, 455, 691
Kzo9I	GATC	6 cut(s)	309, 432, 455, 519, 546, 639
LmnI	GCTCC	3 cut(s)	19, 133, 604
Lsp1109I	GCAGC	2 cut(s)	17, 649
LweI	GCATC	3 cut(s)	61, 586, 717
MabI	ACCWGGT	1 cut(s)	525
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	615
MalI	GATC	6 cut(s)	311, 434, 457, 521, 548, 641
MboI	GATC	6 cut(s)	309, 432, 455, 519, 546, 639
MboII	GAAGA	6 cut(s)	53, 311, 319, 449, 457, 463
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	2 cut(s)	138, 648
MlsI	TGGCCA	3 cut(s)	48, 278, 317
MluCI	AATT	3 cut(s)	197, 344, 675
MluNI	TGGCCA	3 cut(s)	48, 278, 317
MmeI	TCCRAC	2 cut(s)	517, 704
MnlI	CCTC	7 cut(s)	10, 296, 422, 507, 533, 612, 725
Mox20I	TGGCCA	3 cut(s)	48, 278, 317
MscI	TGGCCA	3 cut(s)	48, 278, 317
MseI	TTAA	1 cut(s)	729
Msp20I	TGGCCA	3 cut(s)	48, 278, 317
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	38, 527
MvaI	CCWGG	2 cut(s)	38, 527
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	5 cut(s)	54, 217, 377, 549, 662
NcoI	CCATGG	4 cut(s)	161, 240, 318, 451
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	6 cut(s)	309, 432, 455, 519, 546, 639
NlaIII	CATG	8 cut(s)	130, 165, 175, 211, 244, 322, 455, 691
NlaIV	GGNNCC	2 cut(s)	35, 588
NspI	RCATGY	2 cut(s)	211, 691
PaeI	GCATGC	1 cut(s)	691
PagI	TCATGA	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	122
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	7, 664
Psp124BI	GAGCTC	2 cut(s)	138, 648
Psp6I	CCWGG	2 cut(s)	36, 525
PspGI	CCWGG	2 cut(s)	36, 525
PspN4I	GGNNCC	2 cut(s)	35, 588
PspPI	GGNCC	1 cut(s)	404
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	309
PsyI	GACNNNGTC	1 cut(s)	527
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	3 cut(s)	107, 614, 623
RsaNI	GTAC	3 cut(s)	106, 613, 622
SacI	GAGCTC	2 cut(s)	138, 648
SaqAI	TTAA	1 cut(s)	729
SatI	GCNGC	2 cut(s)	6, 663
Sau3AI	GATC	6 cut(s)	309, 432, 455, 519, 546, 639
Sau96I	GGNCC	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	38, 527
SduI	GDGCHC	2 cut(s)	138, 648
SexAI	ACCWGGT	1 cut(s)	525
SfaNI	GCATC	3 cut(s)	61, 586, 717
SfcI	CTRYAG	2 cut(s)	625, 663
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	98
SphI	GCATGC	1 cut(s)	691
Sse9I	AATT	3 cut(s)	197, 344, 675
SseBI	AGGCCT	1 cut(s)	543
SsiI	CCGC	2 cut(s)	482, 607
SspMI	CTAG	1 cut(s)	99
SstI	GAGCTC	2 cut(s)	138, 648
StuI	AGGCCT	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	36, 525
StyI	CCWWGG	4 cut(s)	161, 240, 318, 451
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	4 cut(s)	363, 435, 522, 642
TasI	AATT	3 cut(s)	197, 344, 675
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	2 cut(s)	5, 662
TspDTI	ATGAA	4 cut(s)	143, 204, 357, 457
TspRI	CASTG	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	527
XagI	CCTNNNNNAGG	1 cut(s)	530
XceI	RCATGY	2 cut(s)	211, 691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.