Rorug02G0029100

O-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
2324867 .. 2325641
775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0029100.1

Sequence Viewer

Length: 465 bp
ATGAATATGAAGTATGTGATCGTGCTTGTCATAGCAATTGCAGCAATCGCAGAAGGCGCAATATACACTGTAGGAGACGACATGGGCTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTACTTTGTGGAGAACGATACTATAGTGTTTAACTTTGACGAAGGACAGCATGACATCACTGTACTAACCAAGGAAGACTTCGACGCCTGCAACATGACGAATCCCTTGTTTCAAACCCCAGAACCAGGTGCAGTTTCGGTTGAAGCGAGCGACACGTTTTACTTCACGTGCAGCTTTGGTCAGCACTGCGCTAATGGGCAAAAGTTCGCCATTTATTTTGCCTCTGCACCTTTGCCTCCCAGTCCGAGTCCGAGTGCATCTGCTGCTGCTGATCAATCTCTGGAAACCCGGCTGTTCAAGTTTGTGTCGGAAAAGAAGGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

16.94

Weight (kDa)

4.34

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 113 1.8e-12 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 3 cut(s) 251, 281, 436
AjnI CCWGG 1 cut(s) 262
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 69
ApeKI GCWGC 4 cut(s) 41, 309, 401, 404
AspLEI GCGC 2 cut(s) 59, 329
AsuC2I CCSGG 1 cut(s) 427
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BbrPI CACGTG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 4 cut(s) 53, 321, 388, 391
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 1 cut(s) 463
BfmI CTRYAG 2 cut(s) 69, 159
BisI GCNGC 4 cut(s) 42, 310, 402, 405
BlsI GCNGC 4 cut(s) 43, 311, 403, 406
Bme1390I CCNGG 2 cut(s) 264, 427
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 2 cut(s) 264, 427
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 427
BsaAI YACGTR 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 4 cut(s) 53, 321, 388, 391
BsgI GTGCAG 3 cut(s) 288, 328, 348
BsiSI CCGG 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 18, 409
BspLI GGNNCC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 18, 409
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 70, 199
BstACI GRCGYC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 226, 286
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 2 cut(s) 59, 329
BstKTI GATC 2 cut(s) 21, 412
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 2 cut(s) 18, 409
BstMWI GCNNNNNNNGC 4 cut(s) 41, 47, 56, 401
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 2 cut(s) 262, 425
BstSFI CTRYAG 2 cut(s) 69, 159
BstV1I GCAGC 4 cut(s) 53, 321, 388, 391
BstV2I GAAGAC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 3 cut(s) 66, 195, 322
Cac8I GCNNGC 2 cut(s) 226, 286
CfoI GCGC 2 cut(s) 59, 329
CseI GACGC 1 cut(s) 230
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 1 cut(s) 200
CviAII CATG 4 cut(s) 82, 123, 188, 232
CviJI RGCY 3 cut(s) 87, 312, 430
CviKI_1 RGCY 3 cut(s) 87, 312, 430
CviQI GTAC 1 cut(s) 200
DpnI GATC 2 cut(s) 20, 411
DpnII GATC 2 cut(s) 18, 409
Eco130I CCWWGG 1 cut(s) 207
Eco72I CACGTG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 85, 126, 191, 235
FalI AAGNNNNNCTT 4 cut(s) 125, 157, 200, 232
FatI CATG 4 cut(s) 81, 122, 187, 231
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 4 cut(s) 42, 310, 402, 405
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 4 cut(s) 42, 310, 402, 405
FspBI CTAG 1 cut(s) 463
GlaI GCGC 2 cut(s) 58, 328
GluI GCNGC 4 cut(s) 42, 310, 402, 405
HapII CCGG 1 cut(s) 427
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 59, 329
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 4 cut(s) 85, 126, 191, 235
Hin6I GCGC 2 cut(s) 57, 327
HinP1I GCGC 2 cut(s) 57, 327
HinfI GANTC 2 cut(s) 238, 385
HpaII CCGG 1 cut(s) 427
Hpy188I TCNGA 3 cut(s) 384, 390, 448
Hpy188III TCNNGA 2 cut(s) 107, 419
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 3 cut(s) 47, 173, 448
HpyCH4III ACNGT 2 cut(s) 70, 199
HpyCH4IV ACGT 2 cut(s) 293, 305
HpyCH4V TGCA 6 cut(s) 41, 228, 269, 309, 365, 395
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 47, 56, 401
HpySE526I ACGT 2 cut(s) 293, 305
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 4 cut(s) 85, 126, 191, 235
HspAI GCGC 2 cut(s) 57, 327
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 2 cut(s) 18, 409
LpnPI CCDG 8 cut(s) 73, 238, 249, 270, 276, 391, 404, 440
Lsp1109I GCAGC 4 cut(s) 53, 321, 388, 391
LweI GCATC 1 cut(s) 404
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 1 cut(s) 463
MaeII ACGT 2 cut(s) 293, 305
MaeIII GTNAC 1 cut(s) 458
MalI GATC 2 cut(s) 20, 411
MboI GATC 2 cut(s) 18, 409
MboII GAAGA 1 cut(s) 224
MfeI CAATTG 1 cut(s) 36
MluCI AATT 1 cut(s) 36
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 3 cut(s) 108, 370, 384
MseI TTAA 1 cut(s) 168
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 2 cut(s) 264, 427
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 4 cut(s) 41, 47, 56, 401
NciI CCSGG 1 cut(s) 427
NdeII GATC 2 cut(s) 18, 409
NlaIII CATG 4 cut(s) 85, 126, 191, 235
NlaIV GGNNCC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 4 cut(s) 43, 311, 403, 406
PleI GAGTC 1 cut(s) 393
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
PpsI GAGTC 1 cut(s) 393
Ppu21I YACGTR 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 262
PspCI CACGTG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 96
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 4 cut(s) 42, 310, 402, 405
Sau3AI GATC 2 cut(s) 18, 409
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 2 cut(s) 264, 427
SetI ASST 5 cut(s) 268, 296, 308, 314, 370
SexAI ACCWGGT 1 cut(s) 262
SfaNI GCATC 1 cut(s) 404
SfcI CTRYAG 2 cut(s) 69, 159
Sse9I AATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 262, 425
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 70, 199
TaiI ACGT 2 cut(s) 296, 308
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 3 cut(s) 73, 202, 329
TseI GCWGC 4 cut(s) 41, 309, 401, 404
TspDTI ATGAA 3 cut(s) 17, 23, 111
TspRI CASTG 3 cut(s) 73, 202, 329
XspI CTAG 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.