Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

7444470 .. 7446406

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG072800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCCAAGAACACCATGGAGATTGGTGTCTACACTGGCTACTCCCTCTTGGCCACAGCCCTTGCTCTCCCTGAAGATGGGAAGGTCGATAATTCATCCCTCAAAATCGATCATATATACGAACAATATATTTTTCTTTAGAAATGATGACTTAATATATATTGGTTTGTCACAGATCTTGGCCATGGACATCAACAAAGAAAACTATGAATTGGGTCTGCCAGTCATCGAAAAAGCTGGTGTTGCCCATAAGATTGACTTCAGGGAAGGCCCTGCCCTCCCCGTCCTCGACCATATGATCGAAGATGAGAAGAATCATGGATCGTTCGACTTCATCTTCGTTGACGCGGACAAGGACAACTATATCAACTACCACAAGAGGCTGATCGACCTGGTCAAGGTCGGAGGCCTGATCGGCTACGACAACACCCTATGGAACGGCTCTGTGGTGGCACCACCTGATGCCCCTCTCCGCAAGTACGTCAGGTACTACAGGGACTTTGTGATCGAGCTCAACAAGGCTCTTGCTGCAGACCCCAGAATTGAGATTTGCATGCTTCCAGTTGGGGATGGCATCACTCTCTGCCGTCGGATTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009698 GO:0009699 GO:0009804 GO:0009805 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0019748 GO:0032259 GO:0042221 GO:0042409 GO:0044237 GO:0044249 GO:0044550 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

199

Amino Acids

22.73

Weight (kDa)

6.96

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	58 - 198	9.9e-62	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	29
AccII	CGCG	1 cut(s)	347
AciI	CCGC	2 cut(s)	347, 472
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	2 cut(s)	50, 180
AcuI	CTGAAG	2 cut(s)	92, 244
AfaI	GTAC	2 cut(s)	479, 488
AfiI	CCNNNNNNNGG	2 cut(s)	76, 397
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	2 cut(s)	236, 511
AluI	AGCT	2 cut(s)	236, 511
Alw21I	GWGCWC	1 cut(s)	513
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	4 cut(s)	50, 180, 268, 406
ApeKI	GCWGC	1 cut(s)	527
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspS9I	GGNCC	1 cut(s)	269
BalI	TGGCCA	2 cut(s)	52, 182
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	2 cut(s)	70, 563
BceAI	ACGGC	2 cut(s)	454, 570
BciT130I	CCWGG	1 cut(s)	392
BfmI	CTRYAG	2 cut(s)	490, 528
BglI	GCCNNNNNGGC	1 cut(s)	414
BglII	AGATCT	1 cut(s)	174
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	2 cut(s)	451, 582
Bsa29I	ATCGAT	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	14, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 397
Bse1I	ACTGG	3 cut(s)	39, 221, 560
BseBI	CCWGG	1 cut(s)	392
BseCI	ATCGAT	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	14, 183
BseGI	GGATG	2 cut(s)	94, 574
BseLI	CCNNNNNNNGG	2 cut(s)	76, 397
BseNI	ACTGG	3 cut(s)	39, 221, 560
BseXI	GCAGC	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	4 cut(s)	52, 182, 270, 408
BshNI	GGYRCC	1 cut(s)	451
BshVI	ATCGAT	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	76, 397
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	4 cut(s)	52, 182, 270, 408
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	7 cut(s)	108, 174, 297, 320, 384, 411, 504
Bsp19I	CCATGG	2 cut(s)	14, 183
BspACI	CCGC	2 cut(s)	347, 472
BspANI	GGCC	4 cut(s)	52, 182, 270, 408
BspDI	ATCGAT	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	451
BsrI	ACTGG	3 cut(s)	39, 221, 560
BssECI	CCNNGG	2 cut(s)	14, 183
BssMI	GATC	7 cut(s)	108, 174, 297, 320, 384, 411, 504
BssT1I	CCWWGG	2 cut(s)	14, 183
Bst2UI	CCWGG	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	554
BstDSI	CCRYGG	2 cut(s)	14, 183
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	94, 574
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	7 cut(s)	111, 177, 300, 323, 387, 414, 507
BstMBI	GATC	7 cut(s)	108, 174, 297, 320, 384, 411, 504
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 414, 527
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	2 cut(s)	490, 528
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	514
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	107
BsuRI	GGCC	4 cut(s)	52, 182, 270, 408
BsuTUI	ATCGAT	1 cut(s)	107
BtgI	CCRYGG	2 cut(s)	14, 183
BtsCI	GGATG	2 cut(s)	94, 574
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	554
Cfr13I	GGNCC	1 cut(s)	269
ClaI	ATCGAT	1 cut(s)	107
CseI	GACGC	1 cut(s)	353
CsiI	ACCWGGT	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	478, 487
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	4 cut(s)	15, 184, 317, 553
CviQI	GTAC	2 cut(s)	478, 487
DpnI	GATC	7 cut(s)	110, 176, 299, 322, 386, 413, 506
DpnII	GATC	7 cut(s)	108, 174, 297, 320, 384, 411, 504
EaeI	YGGCCR	2 cut(s)	50, 180
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	2 cut(s)	14, 183
Eco147I	AGGCCT	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	2 cut(s)	92, 244
EcoICRI	GAGCTC	1 cut(s)	511
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	2 cut(s)	14, 183
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	2 cut(s)	14, 183
FaeI	CATG	4 cut(s)	18, 187, 320, 556
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	4 cut(s)	14, 183, 316, 552
FauNDI	CATATG	1 cut(s)	294
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	2 cut(s)	81, 581
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	528
HaeIII	GGCC	4 cut(s)	52, 182, 270, 408
HgaI	GACGC	1 cut(s)	353
Hin1II	CATG	4 cut(s)	18, 187, 320, 556
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	30, 343
Hpy188I	TCNGA	2 cut(s)	404, 591
Hpy8I	GTNNAC	2 cut(s)	30, 343
Hpy99I	CGWCG	1 cut(s)	591
HpyAV	CCTTC	2 cut(s)	75, 260
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	2 cut(s)	530, 552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 414, 527
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	4 cut(s)	18, 187, 320, 556
Kzo9I	GATC	7 cut(s)	108, 174, 297, 320, 384, 411, 504
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	451, 582
MabI	ACCWGGT	1 cut(s)	390
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	7 cut(s)	110, 176, 299, 322, 386, 413, 506
MboI	GATC	7 cut(s)	108, 174, 297, 320, 384, 411, 504
MboII	GAAGA	4 cut(s)	85, 314, 322, 328
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	513
MlsI	TGGCCA	2 cut(s)	52, 182
MluCI	AATT	3 cut(s)	90, 209, 540
MluNI	TGGCCA	2 cut(s)	52, 182
MmeI	TCCRAC	2 cut(s)	382, 569
MnlI	CCTC	7 cut(s)	55, 109, 287, 296, 372, 398, 477
Mox20I	TGGCCA	2 cut(s)	52, 182
MscI	TGGCCA	2 cut(s)	52, 182
MseI	TTAA	2 cut(s)	152, 594
Msp20I	TGGCCA	2 cut(s)	52, 182
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	242, 414, 527
NcoI	CCATGG	2 cut(s)	14, 183
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	7 cut(s)	108, 174, 297, 320, 384, 411, 504
NlaIII	CATG	4 cut(s)	18, 187, 320, 556
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	168
NspI	RCATGY	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	313
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	529
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	174
PsyI	GACNNNGTC	1 cut(s)	392
RsaI	GTAC	2 cut(s)	479, 488
RsaNI	GTAC	2 cut(s)	478, 487
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	152, 594
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	7 cut(s)	108, 174, 297, 320, 384, 411, 504
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	8 cut(s)	86, 238, 393, 402, 460, 483, 488, 513
SexAI	ACCWGGT	1 cut(s)	390
SfaNI	GCATC	2 cut(s)	451, 582
SfcI	CTRYAG	2 cut(s)	490, 528
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	3 cut(s)	90, 209, 540
SseBI	AGGCCT	1 cut(s)	408
SsiI	CCGC	2 cut(s)	347, 472
SstI	GAGCTC	1 cut(s)	513
StuI	AGGCCT	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	2 cut(s)	14, 183
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	8 cut(s)	86, 107, 228, 288, 300, 327, 387, 507
TasI	AATT	3 cut(s)	90, 209, 540
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	2 cut(s)	152, 594
Tru9I	TTAA	2 cut(s)	152, 594
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	3 cut(s)	83, 222, 322
TspRI	CASTG	1 cut(s)	39
Tth111I	GACNNNGTC	1 cut(s)	392
XagI	CCTNNNNNAGG	1 cut(s)	395
XceI	RCATGY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.