Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

7685852 .. 7687975

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13960.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGACCCAACTGGGAAAAGGATGAAGCAACTGTTGCAGAGTGATGAACTAACTGAGTATATCTTCGAGACCAGTGTGTATCCACGTGAACCGGCGCCTCTCAAGGAGCTAAGGGAAGCCACTGTCAGCCACACCCGGGCTGTGTTCGCTACTGCGCCAGATGCAGGTCAGTTACTAGGCATGCTGTTGAAGCTAGTAGATGCAAAGAAGACAATTGAAATTGGAGTTTACACAGGATACTCTCTCCTCCTCACTGCGCTTACTATTCCTGAGGAGGGAAAGATTGTAGCCATAGATATAGATCGTGAGACATATGAGCAAATAGGGCTGCCAATCATAAAGAAAGCTAGTGTGGAGCACAAAATTGACTTCATTGAATCCCAAGCTGTACCAGCTCTTGATAAGCTATTGGAAAATCAAGAAAATCAAGGCAGTTTCGACTTTGCCTACGTTGATGCAGACAAGGCTAACGATTGGAACTACCATGAGAGATTACTGAAGCTGTTGAAGGTGGGTGGCTTAGTTGTCTACGACAACACACTCGTCTTAGGATCAGTTGTGTGTCCTGAAGAGTCGAATCAACGGCGCAGGACAGAACTGGCTATTGAGCATAACAAGGCACTTGCAGCTGATCCTCGTATACAAATCTCTCATGTTTCTGTGGGTGATGGGATGATGATTTGTCGCCGGATCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

233

Amino Acids

25.96

Weight (kDa)

5.23

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	23 - 231	1.1e-73	O-methyltransferase
Methyltransf_24	PF13578	72 - 179	4.6e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	94
AccI	GTMKAC	2 cut(s)	528, 640
AclWI	GGATC	3 cut(s)	559, 626, 698
AcuI	CTGAAG	2 cut(s)	518, 588
AcvI	CACGTG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	3 cut(s)	136, 164, 275
AgsI	TTSAA	4 cut(s)	190, 218, 377, 508
AluBI	AGCT	8 cut(s)	109, 193, 347, 386, 395, 406, 502, 629
AluI	AGCT	8 cut(s)	109, 193, 347, 386, 395, 406, 502, 629
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	62, 302
AlwI	GGATC	3 cut(s)	559, 626, 698
Ama87I	CYCGRG	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	328, 626
AspLEI	GCGC	4 cut(s)	97, 157, 259, 588
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	136, 137
AsuHPI	GGTGA	1 cut(s)	677
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	94
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	315, 638
BccI	CCATC	1 cut(s)	662
BceAI	ACGGC	1 cut(s)	599
BciVI	GTATCC	2 cut(s)	90, 230
BcnI	CCSGG	2 cut(s)	136, 137
BcoDI	GTCTC	2 cut(s)	62, 302
BfaI	CTAG	3 cut(s)	176, 194, 348
BfoI	RGCGCY	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	155
BfuI	GTATCC	2 cut(s)	90, 230
BisI	GCNGC	2 cut(s)	329, 627
BlsI	GCNGC	2 cut(s)	330, 628
Bme1390I	CCNGG	2 cut(s)	136, 137
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 96
BmrFI	CCNGG	2 cut(s)	136, 137
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	3 cut(s)	151, 190, 445
BmuI	ACTGGG	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	136, 137
BsaAI	YACGTR	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 164, 275
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	3 cut(s)	16, 72, 603
Bse21I	CCTNAGG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	27, 678
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	136, 164, 275
BseMII	CTCAG	2 cut(s)	45, 261
BseNI	ACTGG	3 cut(s)	16, 72, 603
BseRI	GAGGAG	3 cut(s)	236, 239, 287
BseXI	GCAGC	2 cut(s)	315, 638
BshNI	GGYRCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	92, 136, 688
BslI	CCNNNNNNNGG	3 cut(s)	136, 164, 275
BsmAI	GTCTC	2 cut(s)	62, 302
Bso31I	GGTCTC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	4 cut(s)	301, 551, 631, 690
BspCNI	CTCAG	2 cut(s)	46, 262
BspLI	GGNNCC	2 cut(s)	6, 96
BspMI	ACCTGC	1 cut(s)	155
BspPI	GGATC	3 cut(s)	559, 626, 698
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	3 cut(s)	16, 72, 603
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	4 cut(s)	301, 551, 631, 690
BssNAI	GTATAC	1 cut(s)	641
BssNI	GRCGYC	1 cut(s)	95
Bst1107I	GTATAC	1 cut(s)	641
Bst4CI	ACNGT	2 cut(s)	33, 124
Bst6I	CTCTTC	1 cut(s)	564
BstACI	GRCGYC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	5 cut(s)	54, 110, 270, 520, 547
BstF5I	GGATG	2 cut(s)	27, 678
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	4 cut(s)	97, 157, 259, 588
BstKTI	GATC	4 cut(s)	304, 554, 634, 693
BstMAI	GTCTC	2 cut(s)	62, 302
BstMBI	GATC	4 cut(s)	301, 551, 631, 690
BstMWI	GCNNNNNNNGC	8 cut(s)	34, 146, 161, 190, 325, 392, 464, 626
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	134, 135
BstV1I	GCAGC	2 cut(s)	315, 638
BstV2I	GAAGAC	1 cut(s)	215
BstZ17I	GTATAC	1 cut(s)	641
Bsu36I	CCTNAGG	1 cut(s)	270
BsuI	GTATCC	2 cut(s)	90, 230
BtsCI	GGATG	2 cut(s)	27, 678
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	79, 120, 252
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	4 cut(s)	97, 157, 259, 588
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	4
Cfr9I	CCCGGG	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	3 cut(s)	181, 485, 653
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	5 cut(s)	54, 110, 270, 520, 547
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	4 cut(s)	303, 553, 633, 692
DpnII	GATC	4 cut(s)	301, 551, 631, 690
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	518, 588
Eco72I	CACGTG	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	135
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
FaeI	CATG	3 cut(s)	184, 488, 656
FatI	CATG	3 cut(s)	180, 484, 652
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	2 cut(s)	528, 640
Fnu4HI	GCNGC	2 cut(s)	329, 627
FokI	GGATG	2 cut(s)	34, 685
Fsp4HI	GCNGC	2 cut(s)	329, 627
FspBI	CTAG	3 cut(s)	176, 194, 348
GlaI	GCGC	4 cut(s)	96, 156, 258, 587
GluI	GCNGC	2 cut(s)	329, 627
HaeII	RGCGCY	1 cut(s)	98
HapII	CCGG	3 cut(s)	92, 136, 688
HhaI	GCGC	4 cut(s)	97, 157, 259, 588
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	184, 488, 656
Hin6I	GCGC	4 cut(s)	95, 155, 257, 586
HinP1I	GCGC	4 cut(s)	95, 155, 257, 586
HinfI	GANTC	3 cut(s)	377, 572, 577
HpaII	CCGG	3 cut(s)	92, 136, 688
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	4 cut(s)	89, 229, 529, 641
Hpy188I	TCNGA	1 cut(s)	698
Hpy188III	TCNNGA	6 cut(s)	67, 269, 305, 398, 419, 566
Hpy8I	GTNNAC	4 cut(s)	89, 229, 529, 641
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	2 cut(s)	33, 124
HpyCH4IV	ACGT	2 cut(s)	85, 450
HpyCH4V	TGCA	5 cut(s)	37, 164, 203, 458, 626
HpyF10VI	GCNNNNNNNGC	8 cut(s)	34, 146, 161, 190, 325, 392, 464, 626
HpyF3I	CTNAG	5 cut(s)	54, 110, 270, 520, 547
HpySE526I	ACGT	2 cut(s)	85, 450
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	184, 488, 656
HspAI	GCGC	4 cut(s)	95, 155, 257, 586
KasI	GGCGCC	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	301, 551, 631, 690
LmnI	GCTCC	2 cut(s)	106, 355
Lsp1109I	GCAGC	2 cut(s)	315, 638
LweI	GCATC	3 cut(s)	151, 190, 445
MaeI	CTAG	3 cut(s)	176, 194, 348
MaeII	ACGT	2 cut(s)	85, 450
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	4 cut(s)	303, 553, 633, 692
MboI	GATC	4 cut(s)	301, 551, 631, 690
MboII	GAAGA	3 cut(s)	55, 220, 581
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	3 cut(s)	213, 219, 363
Mly113I	GGCGCC	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	581
MnlI	CCTC	6 cut(s)	108, 257, 260, 265, 268, 645
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	3 cut(s)	92, 136, 688
MspR9I	CCNGG	2 cut(s)	136, 137
MunI	CAATTG	1 cut(s)	213
MwoI	GCNNNNNNNGC	8 cut(s)	34, 146, 161, 190, 325, 392, 464, 626
NarI	GGCGCC	1 cut(s)	95
NciI	CCSGG	2 cut(s)	136, 137
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	4 cut(s)	301, 551, 631, 690
NlaIII	CATG	3 cut(s)	184, 488, 656
NlaIV	GGNNCC	2 cut(s)	6, 96
NspI	RCATGY	1 cut(s)	184
PaeI	GCATGC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	377, 577
PkrI	GCNGC	2 cut(s)	330, 628
PleI	GAGTC	1 cut(s)	580
PluTI	GGCGCC	1 cut(s)	98
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	580
Ppu21I	YACGTR	1 cut(s)	86
PspCI	CACGTG	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	6, 96
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SatI	GCNGC	2 cut(s)	329, 627
Sau3AI	GATC	4 cut(s)	301, 551, 631, 690
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	2 cut(s)	136, 137
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	3 cut(s)	151, 190, 445
SfoI	GGCGCC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	4
SmaI	CCCGGG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	3 cut(s)	213, 219, 363
SspDI	GGCGCC	1 cut(s)	94
SspMI	CTAG	3 cut(s)	176, 194, 348
StyD4I	CCNGG	2 cut(s)	134, 135
TaaI	ACNGT	2 cut(s)	33, 124
TaiI	ACGT	2 cut(s)	88, 453
TaqI	TCGA	3 cut(s)	66, 438, 575
TasI	AATT	3 cut(s)	213, 219, 363
TfiI	GAWTC	2 cut(s)	377, 577
TscAI	CASTG	3 cut(s)	79, 127, 259
TseI	GCWGC	2 cut(s)	328, 626
TspDTI	ATGAA	3 cut(s)	38, 60, 361
TspMI	CCCGGG	1 cut(s)	135
TspRI	CASTG	3 cut(s)	79, 127, 259
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	184
XmaI	CCCGGG	1 cut(s)	135
XmiI	GTMKAC	2 cut(s)	528, 640
XspI	CTAG	3 cut(s)	176, 194, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.