Rh2AG074600

O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000432
Physical Location & Seq
Reverse (-)
6216173 .. 6217256
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG074600.1

Sequence Viewer

Length: 717 bp
ATGGAAAACACTAGAAATCAAGTGAGTACCAAGAATCCAACTCTGTTGCAGAGTGAGGAGTTACATGAGTATATACTGAAGACTGGTGTCTACCCAAGAGAACCAAATCCTCTCAAGGAACTAAGGATTGCTACTGCAAATCACCCTATGGCTTTCATGGGTACTGCACCTGATGCAGGTCAGTTAATGGCTATGCTCTTGAAACTAGTGAATCCCAAAAATGCAATTGAAATCGGAGTTTTCACCGGATACTCTCTTCTCCTCACTGCTCTCACGATTCCTGATTATGGCAAGATTATAGCCATAGACATAAACCGGAAAGCATATGAAATAGGCTTACCAATCATCAAAAAAGCCGGTGTAGAGCACAAAATTGACTTCATTGAGTCCCCAGCTCTGCATATTCTTGACAAACTCTTGGAAAATCCAGAGAAGGAAGGGAGTTTCGACTTTGCTTTTGTTGATGCGGACAAGAATAACTACTGGAACTACCACAAGAGGCTAATGAAGCTGGTTAAGATTGGTGGGATGGTTATCTATGATAACACACTTTGGGGAGGGTCAGTTGCTCTGCGTGAAGAAGATGTTCCAGAGGCCAAAAGGGAATGGAGGCAATGTGCAATCGAGTTTAACAAATTGATTTCGGCTGACCCTCGTGTCGAAATGTCCCAAGTTCCTTTGGGTGATGGAATCACAATTTGCAGGCGCGTTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

238

Amino Acids

26.85

Weight (kDa)

6.24

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 34 - 237 2.4e-76 O-methyltransferase
Methyltransf_24 PF13578 76 - 182 5.8e-09 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 656
Acc36I ACCTGC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 90
AccII CGCG 1 cut(s) 708
AciI CCGC 1 cut(s) 467
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 2 cut(s) 28, 163
AfiI CCNNNNNNNGG 2 cut(s) 176, 287
AgsI TTSAA 2 cut(s) 202, 230
AhlI ACTAGT 1 cut(s) 205
AluBI AGCT 2 cut(s) 395, 511
AluI AGCT 2 cut(s) 395, 511
Alw21I GWGCWC 1 cut(s) 369
AoxI GGCC 1 cut(s) 594
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
Asp700I GAANNNNTTC 1 cut(s) 585
AspLEI GCGC 1 cut(s) 708
AsuHPI GGTGA 3 cut(s) 134, 235, 695
BauI CACGAG 1 cut(s) 654
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 369
BccI CCATC 2 cut(s) 523, 680
BciVI GTATCC 1 cut(s) 242
BcuI ACTAGT 1 cut(s) 205
BfaI CTAG 2 cut(s) 12, 206
BfuAI ACCTGC 1 cut(s) 167
BfuI GTATCC 1 cut(s) 242
BmsI GCATC 2 cut(s) 163, 454
BoxI GACNNNNGTC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 533
BsaWI WCCGGW 2 cut(s) 245, 315
BsaXI ACNNNNNCTCC 4 cut(s) 549, 579, 601, 631
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 287
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 88, 488
Bse3DI GCAATG 1 cut(s) 620
Bse8I GATNNNNATC 1 cut(s) 533
BseGI GGATG 1 cut(s) 534
BseJI GATNNNNATC 1 cut(s) 533
BseLI CCNNNNNNNGG 2 cut(s) 176, 287
BseMI GCAATG 1 cut(s) 620
BseNI ACTGG 2 cut(s) 88, 488
BseRI GAGGAG 2 cut(s) 71, 251
BseYI CCCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 708
BshFI GGCC 1 cut(s) 596
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 3 cut(s) 246, 316, 357
BslFI GGGAC 2 cut(s) 373, 652
BslI CCNNNNNNNGG 2 cut(s) 176, 287
BsmFI GGGAC 2 cut(s) 373, 652
BsnI GGCC 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 369
BspACI CCGC 1 cut(s) 467
BspANI GGCC 1 cut(s) 596
BspFNI CGCG 1 cut(s) 708
BspMI ACCTGC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 620
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 2 cut(s) 88, 488
BssAI RCCGGY 1 cut(s) 356
BssSI CACGAG 1 cut(s) 654
Bst2BI CACGAG 1 cut(s) 654
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 704
BstDEI CTNAG 1 cut(s) 122
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 534
BstFNI CGCG 1 cut(s) 708
BstHHI GCGC 1 cut(s) 708
BstMWI GCNNNNNNNGC 2 cut(s) 173, 508
BstPAI GACNNNNGTC 1 cut(s) 86
BstUI CGCG 1 cut(s) 708
BstV2I GAAGAC 1 cut(s) 86
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 1 cut(s) 596
BtsCI GGATG 1 cut(s) 534
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 704
CfoI GCGC 1 cut(s) 708
Cfr10I RCCGGY 1 cut(s) 356
Csp6I GTAC 2 cut(s) 27, 162
CviAII CATG 2 cut(s) 65, 157
CviQI GTAC 2 cut(s) 27, 162
DdeI CTNAG 1 cut(s) 122
DrdI GACNNNNNNGTC 1 cut(s) 656
DseDI GACNNNNNNGTC 1 cut(s) 656
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 98
EcoNI CCTNNNNNAGG 1 cut(s) 174
FaeI CATG 2 cut(s) 68, 160
FaqI GGGAC 2 cut(s) 373, 652
FatI CATG 2 cut(s) 64, 156
FauNDI CATATG 1 cut(s) 325
FblI GTMKAC 1 cut(s) 90
FokI GGATG 1 cut(s) 541
FspBI CTAG 2 cut(s) 12, 206
GlaI GCGC 1 cut(s) 707
GsaI CCCAGC 1 cut(s) 395
HaeIII GGCC 1 cut(s) 596
HapII CCGG 3 cut(s) 246, 316, 357
HhaI GCGC 1 cut(s) 708
Hin1II CATG 2 cut(s) 68, 160
Hin6I GCGC 1 cut(s) 706
HinP1I GCGC 1 cut(s) 706
HinfI GANTC 5 cut(s) 34, 211, 277, 386, 690
HpaII CCGG 3 cut(s) 246, 316, 357
HphI GGTGA 3 cut(s) 134, 235, 695
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 6 cut(s) 199, 274, 281, 407, 428, 590
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 427, 431
HpyCH4V TGCA 8 cut(s) 49, 137, 167, 176, 224, 400, 620, 702
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 508
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 2 cut(s) 68, 160
HspAI GCGC 1 cut(s) 706
LweI GCATC 2 cut(s) 163, 454
MaeI CTAG 2 cut(s) 12, 206
MaeIII GTNAC 1 cut(s) 60
MboII GAAGA 4 cut(s) 91, 248, 590, 593
MfeI CAATTG 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 4 cut(s) 225, 372, 635, 696
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 8 cut(s) 49, 120, 272, 492, 551, 586, 603, 663
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 3 cut(s) 185, 516, 630
MspI CCGG 3 cut(s) 246, 316, 357
MunI CAATTG 1 cut(s) 225
MvnI CGCG 1 cut(s) 708
MwoI GCNNNNNNNGC 2 cut(s) 173, 508
NdeI CATATG 1 cut(s) 325
NlaIII CATG 2 cut(s) 68, 160
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 4 cut(s) 34, 211, 277, 690
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PshAI GACNNNNGTC 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 391
RsaI GTAC 2 cut(s) 28, 163
RsaNI GTAC 2 cut(s) 27, 162
SaqAI TTAA 3 cut(s) 185, 516, 630
SchI GAGTC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 369
SetI ASST 4 cut(s) 172, 181, 397, 513
SfaNI GCATC 2 cut(s) 163, 454
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SpeI ACTAGT 1 cut(s) 205
Sse9I AATT 4 cut(s) 225, 372, 635, 696
SsiI CCGC 1 cut(s) 467
SspMI CTAG 2 cut(s) 12, 206
TaqI TCGA 3 cut(s) 447, 624, 660
TasI AATT 4 cut(s) 225, 372, 635, 696
TfiI GAWTC 4 cut(s) 34, 211, 277, 690
Tru1I TTAA 3 cut(s) 185, 516, 630
Tru9I TTAA 3 cut(s) 185, 516, 630
TscAI CASTG 1 cut(s) 271
TspDTI ATGAA 4 cut(s) 145, 342, 370, 521
TspRI CASTG 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 2 cut(s) 12, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.