pycom02g05780

O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000432
Physical Location & Seq
Reverse (-)
3892411 .. 3893937
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g05780.1

Sequence Viewer

Length: 486 bp
ATGTTTACCTACCGCAAACATTATGCCTTGCAGATTACGGCCATAGACATCGACCGAAAAGCATACGAAATGGGGTTGCCAAGTATCAAAAAAGCTGGCGTCGAAAGCAAAATCGACTTCATTGAGTCCCCAGCTATGCCAATTCTTGATAAACTCTTAGAAGACCCAGAGAAGGAAGGGAGTTTCGACTTTGCTTTCGTTGACGCGGACAAGAACAACTACTGGAACTACCACGAAAGGCTAATCAAACTGATTAAGGTTGGCGGGATGGTAATGTATGATAACACACTCTGGGGAGGAACAGTTGCTTGGCCGGAAGAGGATGTTCCGGAGGCCAAAAGGGAGTGGCGGCGGTGTGCAATTGAGTTTAACGAATTGGTTTCCGCTGACGCTCGCGTCGAAATTTCCCAGGTTCCCGTGTTCATCTCAACTTTCATTTGTCACAGCCTTGCCGAAATGTACATTTCCAAAAGCTCATGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

162

Amino Acids

18.55

Weight (kDa)

5.02

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 11 - 147 3.3e-44 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AccII CGCG 2 cut(s) 206, 396
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 6 cut(s) 13, 206, 264, 349, 352, 384
AcoI YGGCCR 2 cut(s) 39, 311
AcsI RAATTY 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 172
AjnI CCWGG 1 cut(s) 408
AjuI GAANNNNNNNTTGG 2 cut(s) 292, 324
AluBI AGCT 3 cut(s) 95, 134, 474
AluI AGCT 3 cut(s) 95, 134, 474
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 3 cut(s) 39, 311, 333
ApoI RAATTY 1 cut(s) 402
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
BbsI GAAGAC 1 cut(s) 168
BccI CCATC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 410
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 227
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 2 cut(s) 273, 328
BseLI CCNNNNNNNGG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 227
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 2 cut(s) 206, 396
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 3 cut(s) 41, 313, 335
BsiEI CGRYCG 1 cut(s) 55
BsiSI CCGG 2 cut(s) 314, 329
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 3 cut(s) 41, 313, 335
Bsp13I TCCGGA 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 459
BspACI CCGC 6 cut(s) 13, 206, 264, 349, 352, 384
BspANI GGCC 3 cut(s) 41, 313, 335
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 2 cut(s) 206, 396
BspLI GGNNCC 1 cut(s) 414
BsrGI TGTACA 1 cut(s) 459
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 408
BssNI GRCGYC 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 312
BstACI GRCGYC 1 cut(s) 99
BstAUI TGTACA 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 97, 394
BstDEI CTNAG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 273, 328
BstFNI CGCG 2 cut(s) 206, 396
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstUI CGCG 2 cut(s) 206, 396
BstV2I GAAGAC 1 cut(s) 168
BsuRI GGCC 3 cut(s) 41, 313, 335
BtsCI GGATG 2 cut(s) 273, 328
Cac8I GCNNGC 2 cut(s) 97, 394
CseI GACGC 4 cut(s) 88, 212, 385, 398
Csp6I GTAC 1 cut(s) 460
CviAII CATG 1 cut(s) 477
CviJI RGCY 8 cut(s) 41, 95, 134, 241, 313, 335, 447, 474
CviKI_1 RGCY 8 cut(s) 41, 95, 134, 241, 313, 335, 447, 474
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 1 cut(s) 157
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 2 cut(s) 39, 311
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 408
FaeI CATG 1 cut(s) 480
FaiI YATR 6 cut(s) 24, 44, 64, 137, 279, 478
FaqI GGGAC 1 cut(s) 112
FatI CATG 1 cut(s) 476
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 2 cut(s) 280, 335
Fsp4HI GCNGC 1 cut(s) 350
GluI GCNGC 1 cut(s) 350
GsaI CCCAGC 1 cut(s) 134
HaeIII GGCC 3 cut(s) 41, 313, 335
HapII CCGG 2 cut(s) 314, 329
HgaI GACGC 4 cut(s) 88, 212, 385, 398
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 480
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 125
HpaII CCGG 2 cut(s) 314, 329
Hpy166II GTNNAC 2 cut(s) 6, 202
Hpy188III TCNNGA 2 cut(s) 146, 329
Hpy8I GTNNAC 2 cut(s) 6, 202
Hpy99I CGWCG 2 cut(s) 104, 401
HpyAV CCTTC 2 cut(s) 166, 170
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 31, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 480
Kpn2I TCCGGA 1 cut(s) 328
LpnPI CCDG 9 cut(s) 81, 144, 180, 208, 277, 327, 342, 395, 422
MaeIII GTNAC 1 cut(s) 440
MboII GAAGA 2 cut(s) 173, 329
MfeI CAATTG 1 cut(s) 360
MluCI AATT 4 cut(s) 141, 360, 374, 402
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 3 cut(s) 290, 313, 325
MroI TCCGGA 1 cut(s) 328
MseI TTAA 2 cut(s) 255, 369
MslI CAYNNNNRTG 1 cut(s) 481
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 2 cut(s) 314, 329
MspR9I CCNGG 1 cut(s) 410
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 2 cut(s) 206, 396
MwoI GCNNNNNNNGC 1 cut(s) 105
NlaIII CATG 1 cut(s) 480
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PkrI GCNGC 1 cut(s) 351
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 130
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 414
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 481
SaqAI TTAA 2 cut(s) 255, 369
SatI GCNGC 1 cut(s) 350
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 410
SetI ASST 6 cut(s) 11, 97, 136, 261, 414, 476
SmiMI CAYNNNNRTG 1 cut(s) 481
Sse9I AATT 4 cut(s) 141, 360, 374, 402
SsiI CCGC 6 cut(s) 13, 206, 264, 349, 352, 384
StyD4I CCNGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 5 cut(s) 51, 102, 114, 186, 399
TaqII GACCGA 1 cut(s) 69
TasI AATT 4 cut(s) 141, 360, 374, 402
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 352
Tru1I TTAA 2 cut(s) 255, 369
Tru9I TTAA 2 cut(s) 255, 369
TseFI GTSAC 1 cut(s) 440
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 109, 412, 424
XapI RAATTY 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.