Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017518.1

Orthogroup ID

OG0000432

Physical Location & Seq

Genomic Coordinates Reverse (-)

10769 .. 12115

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017518.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggactccagaggggttaagttcacaaagggactgttgcaaagtgatgaactatctcagtacatcttggagactagtgtgtatcctcgtgaaccagcgcctctcaaggagctaagggatgccactgccagtcatcctcgggctgggatgtctactgcaccagatggaggtcagctactagccatgctgttgaagctagtagatgcaaacaagactattgaaattggggttttcacgggatactctcttctcctcactgcgcttacaattcccgaggatggcaagattgtagccattgatatagatagtgagacatatgaacaagtagggttgccaatcataaagaaagcaggtgttgagcacaaaattgatttcattgaatccgaggctgtaccagttcttgataagctattagaaaatcctgaaaatgaaggcagttttgactttgcctacgtggatgccgacaaggctaacaattggaattaccacgagagactactgaagctgttgaaggtgggtgccgtcgttgtctatgacaacacactcgtcagaggatcagtcgcattgcctgatgagctagttccagagctgaggaaacagcgcagacagctagccattgagcataacaagacacttgcagccgatcctcgtatccaaatctcgcatgcttctgtgggtgatgggatcatgatttgtcgccgaatcatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

236

Amino Acids

26.07

Weight (kDa)

5.21

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34050 AT4G34050 AT4G34050
fragaria_vesca	FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica	MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica	Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis	pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis	RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata	RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora	Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa	Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha	Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana	Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	152
AclWI	GGATC	3 cut(s)	562, 638, 692
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	2 cut(s)	62, 393
AfiI	CCNNNNNNNGG	3 cut(s)	143, 167, 278
AgsI	TTSAA	4 cut(s)	193, 221, 380, 511
AhlI	ACTAGT	1 cut(s)	74
AluBI	AGCT	8 cut(s)	112, 175, 196, 409, 505, 577, 589, 610
AluI	AGCT	8 cut(s)	112, 175, 196, 409, 505, 577, 589, 610
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	3 cut(s)	65, 305, 487
AlwI	GGATC	3 cut(s)	562, 638, 692
Ama87I	CYCGRG	2 cut(s)	138, 272
ApeKI	GCWGC	1 cut(s)	638
AspLEI	GCGC	3 cut(s)	100, 262, 603
AsuHPI	GGTGA	1 cut(s)	689
AsuNHI	GCTAGC	1 cut(s)	610
AvaI	CYCGRG	2 cut(s)	138, 272
BanI	GGYRCC	1 cut(s)	518
BauI	CACGAG	2 cut(s)	87, 488
Bbv12I	GWGCWC	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	590
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	3 cut(s)	158, 272, 674
BceAI	ACGGC	1 cut(s)	506
BciVI	GTATCC	3 cut(s)	93, 233, 662
BcoDI	GTCTC	3 cut(s)	65, 305, 487
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	5 cut(s)	75, 179, 197, 578, 611
BfoI	RGCGCY	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	341
BfuI	GTATCC	3 cut(s)	93, 233, 662
BglI	GCCNNNNNGGC	1 cut(s)	467
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
BmeT110I	CYCGRG	2 cut(s)	138, 272
BmiI	GGNNCC	1 cut(s)	520
BmsI	GCATC	3 cut(s)	109, 193, 448
BmtI	GCTAGC	1 cut(s)	614
Bpu10I	CCTNAGC	2 cut(s)	113, 590
BpuEI	CTTGAG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	454
BsaJI	CCNNGG	3 cut(s)	137, 273, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 167, 278
Bse1I	ACTGG	2 cut(s)	129, 395
Bse3DI	GCAATG	1 cut(s)	563
BseDI	CCNNGG	3 cut(s)	137, 273, 384
BseGI	GGATG	5 cut(s)	124, 133, 153, 283, 463
BseLI	CCNNNNNNNGG	3 cut(s)	143, 167, 278
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	2 cut(s)	71, 581
BseNI	ACTGG	2 cut(s)	129, 395
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	650
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	2 cut(s)	138, 272
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	143, 167, 278
BsmAI	GTCTC	3 cut(s)	65, 305, 487
BsmFI	GGGAC	1 cut(s)	45
BsoBI	CYCGRG	2 cut(s)	138, 272
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	554, 643, 684
BspCNI	CTCAG	2 cut(s)	70, 582
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	341
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	3 cut(s)	562, 638, 692
BspT107I	GGYRCC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	129, 395
BssECI	CCNNGG	3 cut(s)	137, 273, 384
BssMI	GATC	3 cut(s)	554, 643, 684
BssSI	CACGAG	2 cut(s)	87, 488
Bst2BI	CACGAG	2 cut(s)	87, 488
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	612, 666
BstDEI	CTNAG	3 cut(s)	57, 113, 590
BstF5I	GGATG	5 cut(s)	124, 133, 153, 283, 463
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	3 cut(s)	100, 262, 603
BstKTI	GATC	3 cut(s)	557, 646, 687
BstMAI	GTCTC	3 cut(s)	65, 305, 487
BstMBI	GATC	3 cut(s)	554, 643, 684
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 467, 574, 607
BstNSI	RCATGY	1 cut(s)	668
BstV1I	GCAGC	1 cut(s)	650
BsuI	GTATCC	3 cut(s)	93, 233, 662
BtsCI	GGATG	5 cut(s)	124, 133, 153, 283, 463
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	2 cut(s)	123, 255
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	2 cut(s)	612, 666
CciI	TCATGA	1 cut(s)	687
CfoI	GCGC	3 cut(s)	100, 262, 603
Csp6I	GTAC	2 cut(s)	61, 392
CviAII	CATG	3 cut(s)	184, 665, 688
CviQI	GTAC	2 cut(s)	61, 392
DdeI	CTNAG	3 cut(s)	57, 113, 590
DpnI	GATC	3 cut(s)	556, 645, 686
DpnII	GATC	3 cut(s)	554, 643, 684
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	521
Eco88I	CYCGRG	2 cut(s)	138, 272
FaeI	CATG	3 cut(s)	187, 668, 691
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	3 cut(s)	183, 664, 687
FauNDI	CATATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	5 cut(s)	120, 131, 160, 290, 470
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	5 cut(s)	75, 179, 197, 578, 611
GlaI	GCGC	3 cut(s)	99, 261, 602
GluI	GCNGC	1 cut(s)	639
GsaI	CCCAGC	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	101
HhaI	GCGC	3 cut(s)	100, 262, 603
Hin1II	CATG	3 cut(s)	187, 668, 691
Hin6I	GCGC	3 cut(s)	98, 260, 601
HinP1I	GCGC	3 cut(s)	98, 260, 601
HinfI	GANTC	3 cut(s)	5, 380, 702
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	3 cut(s)	24, 92, 153
Hpy188I	TCNGA	2 cut(s)	385, 551
Hpy188III	TCNNGA	7 cut(s)	9, 89, 272, 401, 422, 584, 688
Hpy8I	GTNNAC	3 cut(s)	24, 92, 153
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	2 cut(s)	425, 505
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	4 cut(s)	40, 158, 206, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 467, 574, 607
HpyF3I	CTNAG	3 cut(s)	57, 113, 590
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	187, 668, 691
HspAI	GCGC	3 cut(s)	98, 260, 601
Kzo9I	GATC	3 cut(s)	554, 643, 684
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	1 cut(s)	650
LweI	GCATC	3 cut(s)	109, 193, 448
MaeI	CTAG	5 cut(s)	75, 179, 197, 578, 611
MaeII	ACGT	1 cut(s)	453
MalI	GATC	3 cut(s)	556, 645, 686
MboI	GATC	3 cut(s)	554, 643, 684
MboII	GAAGA	1 cut(s)	239
MfeI	CAATTG	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	5 cut(s)	222, 267, 366, 475, 481
MseI	TTAA	1 cut(s)	18
MunI	CAATTG	1 cut(s)	475
MwoI	GCNNNNNNNGC	4 cut(s)	193, 467, 574, 607
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	554, 643, 684
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	3 cut(s)	187, 668, 691
NlaIV	GGNNCC	1 cut(s)	520
NspI	RCATGY	1 cut(s)	668
PaeI	GCATGC	1 cut(s)	668
PagI	TCATGA	1 cut(s)	687
PaqCI	CACCTGC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	380, 702
PkrI	GCNGC	1 cut(s)	640
Ppu21I	YACGTR	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	520
RsaI	GTAC	2 cut(s)	62, 393
RsaNI	GTAC	2 cut(s)	61, 392
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	3 cut(s)	554, 643, 684
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	3 cut(s)	109, 193, 448
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	74
SphI	GCATGC	1 cut(s)	668
Sse9I	AATT	5 cut(s)	222, 267, 366, 475, 481
SspMI	CTAG	5 cut(s)	75, 179, 197, 578, 611
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	456
TasI	AATT	5 cut(s)	222, 267, 366, 475, 481
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	380, 702
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	130, 262
TseI	GCWGC	1 cut(s)	638
TspDTI	ATGAA	4 cut(s)	63, 333, 364, 444
TspRI	CASTG	2 cut(s)	130, 262
XceI	RCATGY	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	5 cut(s)	75, 179, 197, 578, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.