FvH4_1g15070

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000890
Physical Location & Seq
Forward (+)
8518730 .. 8520018
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15070.t1

Sequence Viewer

Length: 546 bp
ATGGAGGAATATATAAAAGTGGTGTTGAAAAACATTGTCGCAGCTGAAGCAGTAGTTGCGAACTGGTACAAGCATTTTGTACCAGCTTTCGCAAGCGAAGTGCTGGAGGGAATTTTTCTTTGGGCTACGAAATGTGCAGAAAGATATGAGCGATTTCAAAACTCTATCACTTTTATGATGCTCTTGTTCTTTACATCCCTTTTCATTTGGAGTGGCCATGCTCAACATGCGATTAAGAGAAAGGAAATTGTATTCTCTGTAATTGCCGCTTGCTTTGGGTTACTGCTACTCTACCGTTCAGCAAGCTTCAGTCTGCTTGGCACAGTTTATCTTATCGTCGAAGGCCACCCTTTACACAATCTGCACCAAAACTGCAGAACTCGGATCTTTGGTGACTGGAACTGTAGTATTCGTCATATACGTCGTGAGAAAAACAAGGTTGCATATAATCTTGCCAATTTGGGGCATGATGTAGGTCTCCGTATTCATCCTTTGGATTGCCCCCCTCCTTCAGTCTTGAGCCTAATTGAAGCTGATAACCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

182

Amino Acids

20.79

Weight (kDa)

8.85

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 267, 541
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 3 cut(s) 66, 292, 495
AfaI GTAC 2 cut(s) 68, 81
AfiI CCNNNNNNNGG 1 cut(s) 462
AgsI TTSAA 3 cut(s) 28, 158, 530
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AluBI AGCT 4 cut(s) 44, 86, 306, 533
AluI AGCT 4 cut(s) 44, 86, 306, 533
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 1 cut(s) 392
AoxI GGCC 2 cut(s) 214, 343
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 404
BalI TGGCCA 1 cut(s) 216
BbvI GCAGC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 1 cut(s) 544
BfmI CTRYAG 2 cut(s) 373, 403
BisI GCNGC 2 cut(s) 42, 267
BlsI GCNGC 2 cut(s) 43, 268
BmsI GCATC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 538
BsaI GGTCTC 1 cut(s) 482
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse1I ACTGG 2 cut(s) 68, 401
BseGI GGATG 2 cut(s) 194, 487
BseLI CCNNNNNNNGG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 68, 401
BseXI GCAGC 1 cut(s) 53
BsgI GTGCAG 2 cut(s) 156, 347
BshFI GGCC 2 cut(s) 216, 345
BslI CCNNNNNNNGG 1 cut(s) 462
BsmAI GTCTC 1 cut(s) 482
BsnI GGCC 2 cut(s) 216, 345
Bso31I GGTCTC 1 cut(s) 482
Bsp143I GATC 1 cut(s) 384
BspACI CCGC 2 cut(s) 267, 541
BspANI GGCC 2 cut(s) 216, 345
BspMAI CTGCAG 1 cut(s) 377
BspPI GGATC 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 482
BsrI ACTGG 2 cut(s) 68, 401
BssMI GATC 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 296, 325, 404
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 94, 271, 304
BstF5I GGATG 2 cut(s) 194, 487
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 227
BstNSI RCATGY 1 cut(s) 230
BstSFI CTRYAG 2 cut(s) 373, 403
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
BsuRI GGCC 2 cut(s) 216, 345
BtsCI GGATG 2 cut(s) 194, 487
Cac8I GCNNGC 3 cut(s) 94, 271, 304
Csp6I GTAC 2 cut(s) 67, 80
CviAII CATG 3 cut(s) 218, 227, 467
CviJI RGCY 8 cut(s) 44, 86, 125, 216, 306, 345, 522, 533
CviKI_1 RGCY 8 cut(s) 44, 86, 125, 216, 306, 345, 522, 533
CviQI GTAC 2 cut(s) 67, 80
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 482
Eco57I CTGAAG 3 cut(s) 66, 292, 495
FaeI CATG 3 cut(s) 221, 230, 470
FatI CATG 3 cut(s) 217, 226, 466
Fnu4HI GCNGC 2 cut(s) 42, 267
FokI GGATG 2 cut(s) 181, 474
Fsp4HI GCNGC 2 cut(s) 42, 267
FspBI CTAG 1 cut(s) 544
GluI GCNGC 2 cut(s) 42, 267
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 216, 345
Hin1II CATG 3 cut(s) 221, 230, 470
HindIII AAGCTT 1 cut(s) 304
HphI GGTGA 1 cut(s) 404
Hpy188I TCNGA 1 cut(s) 384
Hpy188III TCNNGA 2 cut(s) 425, 517
Hpy99I CGWCG 2 cut(s) 341, 426
HpyAV CCTTC 2 cut(s) 335, 519
HpyCH4III ACNGT 3 cut(s) 296, 325, 404
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 4 cut(s) 137, 364, 375, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 227
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 3 cut(s) 221, 230, 470
Kzo9I GATC 1 cut(s) 384
LpnPI CCDG 4 cut(s) 49, 89, 96, 382
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 544
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 279, 392
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MflI RGATCY 1 cut(s) 384
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 5 cut(s) 111, 246, 261, 457, 525
MluNI TGGCCA 1 cut(s) 216
MnlI CCTC 2 cut(s) 100, 516
Mox20I TGGCCA 1 cut(s) 216
MscI TGGCCA 1 cut(s) 216
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 227
NdeII GATC 1 cut(s) 384
NlaIII CATG 3 cut(s) 221, 230, 470
NmuCI GTSAC 1 cut(s) 392
NspI RCATGY 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PkrI GCNGC 2 cut(s) 43, 268
PstI CTGCAG 1 cut(s) 377
PsuI RGATCY 1 cut(s) 384
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 2 cut(s) 68, 81
RsaNI GTAC 2 cut(s) 67, 80
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 2 cut(s) 42, 267
Sau3AI GATC 1 cut(s) 384
SetI ASST 7 cut(s) 46, 88, 308, 424, 441, 478, 535
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 2 cut(s) 373, 403
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 5 cut(s) 111, 246, 261, 457, 525
SsiI CCGC 2 cut(s) 267, 541
SspMI CTAG 1 cut(s) 544
TaaI ACNGT 3 cut(s) 296, 325, 404
TaiI ACGT 1 cut(s) 424
TaqI TCGA 1 cut(s) 339
TasI AATT 5 cut(s) 111, 246, 261, 457, 525
TauI GCSGC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 2 cut(s) 193, 476
TspGWI ACGGA 1 cut(s) 470
XapI RAATTY 1 cut(s) 111
XceI RCATGY 1 cut(s) 230
XspI CTAG 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.