RchiOBHm_Chr1g0331331

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000890
Physical Location & Seq
Reverse (-)
21153064 .. 21153519
456 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56036

Sequence Viewer

Length: 456 bp
ATGGGTAAAATTGGGGTAGGTGGTGTAATTAGGAGTCATGATGGCTCTTGGGTTGCGGGATTTTATGCCAACCTGGGAAGTGGCTCTGTTCTCCAATCTGAGGCATGGGGTCTGTTGTTGGGGCTAAAATTGGCCTATGATAATCAATGCTCCCATTTGTATGTTGAAAGTGATTCTGAAACCCTTGTTAACATGGTAAAGAATGGAGTGGATGAAGTGCATCCACTAAAGACAATCCTCAATTGTTGCTCATTCTTCCAACAAAAGTTCCTGAGCTTTGATATTAGACACACCTATAGAGAAGTGAATGCAGTTGTAGATATCCTATCCAAGGATGGGTTGCAGGCTGAAGCTGGGGTGCATGTCATGTTGCATCCTCCTCCACAAGTTATTACCTCTCTTCTTGATGACTTGTGTGAATTTCCTAGAGATAGGATCGTGAATTTCGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

151

Amino Acids

16.69

Weight (kDa)

5.2

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 5 - 112 1.3e-21 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 2 cut(s) 419, 442
AcuI CTGAAG 1 cut(s) 369
AfiI CCNNNNNNNGG 3 cut(s) 100, 331, 336
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 2 cut(s) 276, 353
AluI AGCT 2 cut(s) 276, 353
AlwI GGATC 1 cut(s) 443
AoxI GGCC 1 cut(s) 132
ApoI RAATTY 2 cut(s) 419, 442
AsuII TTCGAA 1 cut(s) 447
BccI CCATC 2 cut(s) 35, 329
BciT130I CCWGG 1 cut(s) 74
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 2 cut(s) 229, 382
Bpu10I CCTNAGC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 73, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 331, 336
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 73, 330
BseGI GGATG 4 cut(s) 217, 220, 340, 373
BseLI CCNNNNNNNGG 3 cut(s) 100, 331, 336
BseMII CTCAG 2 cut(s) 90, 263
BseRI GAGGAG 1 cut(s) 369
BseYI CCCAGC 1 cut(s) 353
BshFI GGCC 1 cut(s) 134
BslI CCNNNNNNNGG 3 cut(s) 100, 331, 336
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 447
Bsp143I GATC 1 cut(s) 435
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 91, 264
BspHI TCATGA 1 cut(s) 37
BspPI GGATC 1 cut(s) 443
BspT104I TTCGAA 1 cut(s) 447
BssECI CCNNGG 2 cut(s) 73, 330
BssMI GATC 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 405
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 99, 272
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 4 cut(s) 217, 220, 340, 373
BstKTI GATC 1 cut(s) 438
BstMBI GATC 1 cut(s) 435
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 295
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 4 cut(s) 217, 220, 340, 373
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 37
CviAII CATG 5 cut(s) 38, 105, 193, 362, 367
CviJI RGCY 7 cut(s) 45, 84, 124, 134, 276, 347, 353
CviKI_1 RGCY 7 cut(s) 45, 84, 124, 134, 276, 347, 353
DdeI CTNAG 2 cut(s) 99, 272
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 330
Eco32I GATATC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 369
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 5 cut(s) 41, 108, 196, 365, 370
FaiI YATR 9 cut(s) 39, 66, 106, 138, 162, 194, 297, 363, 368
FatI CATG 5 cut(s) 37, 104, 192, 361, 366
FauI CCCGC 1 cut(s) 49
FokI GGATG 4 cut(s) 207, 224, 347, 360
FspBI CTAG 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 134
Hin1II CATG 5 cut(s) 41, 108, 196, 365, 370
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 2 cut(s) 34, 173
HpaI GTTAAC 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 100, 178
Hpy188III TCNNGA 4 cut(s) 38, 271, 404, 439
Hpy8I GTNNAC 1 cut(s) 190
HpyCH4V TGCA 5 cut(s) 220, 311, 343, 361, 373
HpyF3I CTNAG 2 cut(s) 99, 272
Hsp92II CATG 5 cut(s) 41, 108, 196, 365, 370
KspAI GTTAAC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 5 cut(s) 59, 86, 284, 329, 339
LweI GCATC 2 cut(s) 229, 382
MaeI CTAG 1 cut(s) 426
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 2 cut(s) 247, 392
MfeI CAATTG 1 cut(s) 241
MluCI AATT 6 cut(s) 9, 27, 128, 241, 419, 442
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 5 cut(s) 94, 248, 387, 390, 406
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 1 cut(s) 241
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 1 cut(s) 74
NdeII GATC 1 cut(s) 435
NlaIII CATG 5 cut(s) 41, 108, 196, 365, 370
NspI RCATGY 1 cut(s) 365
NspV TTCGAA 1 cut(s) 447
PagI TCATGA 1 cut(s) 37
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 173
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 1 cut(s) 435
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 74
SetI ASST 6 cut(s) 22, 75, 278, 296, 355, 398
SfaNI GCATC 2 cut(s) 229, 382
SfcI CTRYAG 1 cut(s) 295
SfuI TTCGAA 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 6 cut(s) 9, 27, 128, 241, 419, 442
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 330
TaqI TCGA 1 cut(s) 447
TasI AATT 6 cut(s) 9, 27, 128, 241, 419, 442
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 329
XapI RAATTY 2 cut(s) 419, 442
XceI RCATGY 1 cut(s) 365
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.