Rmu_sc0004805.1_g000052

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004805.1
OG0000890
Physical Location & Seq
Reverse (-)
256955 .. 257692
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004805.1_g000052.1.cds

Sequence Viewer

Length: 375 bp
atgaaatcccacttctgtacaaacccaacttccttctcgagggtcttgaagttgtcaaatttcaccttggtgactgacttggtcaagacttcagctggaaacagatctggtaatattggagcaggtggtgtgctcagagtccaccatggaaattggattatgggtttttatgccaatcttggtactagttcagttattgttgctgaagcatggggcctccttggacttaagatggcctcccaacaaacaaggggcaagattgtagttgaatgtgattcagaggtgcttgttaatcttatggctaatggggttgatgatcttcatcctctcaaacctattatgagcagttgtagaattctcatggaacttctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

124

Amino Acids

13.39

Weight (kDa)

8.96

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 113
AcsI RAATTY 2 cut(s) 58, 354
AcuI CTGAAG 2 cut(s) 75, 225
AfaI GTAC 2 cut(s) 19, 184
AfiI CCNNNNNNNGG 1 cut(s) 39
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 49, 269
AhlI ACTAGT 1 cut(s) 185
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw21I GWGCWC 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 2 cut(s) 214, 234
ApoI RAATTY 2 cut(s) 58, 354
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 55, 82
AvaI CYCGRG 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 226
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 104
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 66, 145, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 321
BseDI CCNNGG 3 cut(s) 66, 145, 220
BseGI GGATG 1 cut(s) 322
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 148
BshFI GGCC 2 cut(s) 216, 236
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 39
BsnI GGCC 2 cut(s) 216, 236
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 135
Bsp1407I TGTACA 1 cut(s) 17
Bsp143I GATC 2 cut(s) 104, 316
Bsp19I CCATGG 1 cut(s) 145
BspANI GGCC 2 cut(s) 216, 236
BspCNI CTCAG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 215
BspMI ACCTGC 1 cut(s) 113
BspTI CTTAAG 1 cut(s) 227
BsrGI TGTACA 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 66, 145, 220
BssMI GATC 2 cut(s) 104, 316
BssT1I CCWWGG 3 cut(s) 66, 145, 220
BstAFI CTTAAG 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 145
BstENI CCTNNNNNAGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 2 cut(s) 107, 319
BstMBI GATC 2 cut(s) 104, 316
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 2 cut(s) 216, 236
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 322
BveI ACCTGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 18, 183
CviAII CATG 3 cut(s) 146, 210, 361
CviJI RGCY 4 cut(s) 95, 216, 236, 302
CviKI_1 RGCY 4 cut(s) 95, 216, 236, 302
CviQI GTAC 2 cut(s) 18, 183
DdeI CTNAG 1 cut(s) 134
DpnI GATC 2 cut(s) 106, 318
DpnII GATC 2 cut(s) 104, 316
Eco130I CCWWGG 3 cut(s) 66, 145, 220
Eco57I CTGAAG 2 cut(s) 75, 225
Eco88I CYCGRG 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 354
EcoT14I CCWWGG 3 cut(s) 66, 145, 220
ErhI CCWWGG 3 cut(s) 66, 145, 220
FaeI CATG 3 cut(s) 149, 213, 364
FaiI YATR 7 cut(s) 147, 161, 171, 211, 299, 341, 362
FatI CATG 3 cut(s) 145, 209, 360
FokI GGATG 1 cut(s) 309
FspBI CTAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 216, 236
Hin1II CATG 3 cut(s) 149, 213, 364
HinfI GANTC 2 cut(s) 138, 275
HphI GGTGA 2 cut(s) 55, 82
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 137, 280
Hpy188III TCNNGA 3 cut(s) 37, 46, 85
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 3 cut(s) 149, 213, 364
Kzo9I GATC 2 cut(s) 104, 316
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 81, 93, 108
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 106, 318
MboI GATC 2 cut(s) 104, 316
MboII GAAGA 1 cut(s) 311
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 58, 151, 354
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 5 cut(s) 33, 227, 247, 274, 336
MseI TTAA 2 cut(s) 228, 291
MslI CAYNNNNRTG 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 95
MspCI CTTAAG 1 cut(s) 227
NcoI CCATGG 1 cut(s) 145
NdeII GATC 2 cut(s) 104, 316
NlaIII CATG 3 cut(s) 149, 213, 364
NlaIV GGNNCC 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 68
PaeR7I CTCGAG 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 275
PflFI GACNNNGTC 1 cut(s) 80
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 1 cut(s) 104
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 19, 184
RsaNI GTAC 2 cut(s) 18, 183
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 2 cut(s) 228, 291
Sau3AI GATC 2 cut(s) 104, 316
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 135
SetI ASST 5 cut(s) 68, 97, 127, 285, 337
Sfr274I CTCGAG 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 37, 227
SmoI CTYRAG 2 cut(s) 37, 227
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 3 cut(s) 58, 151, 354
SspI AATATT 1 cut(s) 115
SspMI CTAG 1 cut(s) 186
StyI CCWWGG 3 cut(s) 66, 145, 220
TaqI TCGA 1 cut(s) 38
TasI AATT 3 cut(s) 58, 151, 354
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 2 cut(s) 228, 291
Tru9I TTAA 2 cut(s) 228, 291
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 17, 311
Tth111I GACNNNGTC 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 37
XapI RAATTY 2 cut(s) 58, 354
XhoI CTCGAG 1 cut(s) 37
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.