Rorug03G0370600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000890
Physical Location & Seq
Forward (+)
45376738 .. 45379456
2719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0370600.1

Sequence Viewer

Length: 492 bp
ATGGTTTACGGGTTCTTCACTTTTGATTTGGGATTCTTCACAAATCACATTACCCAAGGCGACCTCTCTTTATATGAGCAGAAGAACCCGAAGCTCAAGCTCCTTCGACCTCATGAACGGTTTAAGAGATCGAGTTCTTGTGGGAGAGAATTGGATTGTATGTTAAAGTGTGCCCAAGAAGATGGGTTTGGCTTCAGTTTGATGCAAGTCCCGGAGATTCTTGATTTGGGTATCTTCGCCGATCCGGAGCTCTACAAAGCCGCAGATAGAGATGATCTGGAGTTCTTACAGGAAGGCATCGCCATGACCAGACTCGTCGGCCTCTTACACAGCTCGGCGACCTTGCAGAATTCTATCCCTTTCCCTGAAAGGGCCATGTCATTGGCATTTGATATCCTCAATGACCTTGTGGAGGACAAGCGTTCGGACGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGACGATTGTGGAGCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

163

Amino Acids

18.44

Weight (kDa)

4.85

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 1 cut(s) 261
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 178
AfiI CCNNNNNNNGG 2 cut(s) 370, 412
AgsI TTSAA 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 6 cut(s) 94, 100, 250, 333, 458, 485
AluI AGCT 6 cut(s) 94, 100, 250, 333, 458, 485
Alw21I GWGCWC 1 cut(s) 252
AlwI GGATC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 2 cut(s) 319, 372
ApoI RAATTY 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 1 cut(s) 176
BcnI CCSGG 1 cut(s) 212
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 2 cut(s) 192, 306
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 412
BseAI TCCGGA 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 370, 412
BseSI GKGCMC 1 cut(s) 175
BshFI GGCC 2 cut(s) 321, 374
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 2 cut(s) 212, 245
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 370, 412
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 321, 374
Bsp1286I GDGCHC 2 cut(s) 175, 252
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 3 cut(s) 128, 241, 274
BspACI CCGC 1 cut(s) 261
BspANI GGCC 2 cut(s) 321, 374
BspEI TCCGGA 1 cut(s) 244
BspHI TCATGA 1 cut(s) 112
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 448
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 3 cut(s) 128, 241, 274
BssT1I CCWWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 448
BstENI CCTNNNNNAGG 1 cut(s) 410
BstKTI GATC 3 cut(s) 131, 244, 277
BstMBI GATC 3 cut(s) 128, 241, 274
BstSCI CCNGG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 175
BstXI CCANNNNNNTGG 2 cut(s) 182, 382
BsuRI GGCC 2 cut(s) 321, 374
BtgZI GCGATG 1 cut(s) 283
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 372
CviAII CATG 3 cut(s) 113, 304, 376
DpnI GATC 3 cut(s) 130, 243, 276
DpnII GATC 3 cut(s) 128, 241, 274
Eam1104I CTCTTC 1 cut(s) 448
EarI CTCTTC 1 cut(s) 448
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 252
Eco32I GATATC 1 cut(s) 394
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 349
EcoRV GATATC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 3 cut(s) 116, 307, 379
FaiI YATR 7 cut(s) 73, 75, 114, 161, 305, 377, 449
FaqI GGGAC 1 cut(s) 194
FatI CATG 3 cut(s) 112, 303, 375
Fnu4HI GCNGC 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 2 cut(s) 321, 374
HapII CCGG 2 cut(s) 212, 245
Hin1II CATG 3 cut(s) 116, 307, 379
HinfI GANTC 3 cut(s) 33, 217, 312
HpaII CCGG 2 cut(s) 212, 245
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 4 cut(s) 113, 221, 245, 278
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 113, 287
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 205, 346
Hsp92II CATG 3 cut(s) 116, 307, 379
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 128, 241, 274
LguI GCTCTTC 1 cut(s) 448
LmnI GCTCC 3 cut(s) 105, 247, 482
LpnPI CCDG 6 cut(s) 225, 258, 263, 275, 322, 378
LweI GCATC 2 cut(s) 192, 306
MalI GATC 3 cut(s) 130, 243, 276
MboI GATC 3 cut(s) 128, 241, 274
MboII GAAGA 6 cut(s) 7, 28, 94, 191, 226, 465
MhlI GDGCHC 2 cut(s) 175, 252
MluCI AATT 4 cut(s) 149, 349, 432, 487
MlyI GAGTC 1 cut(s) 306
MnlI CCTC 5 cut(s) 74, 120, 332, 406, 407
MroI TCCGGA 1 cut(s) 244
MseI TTAA 3 cut(s) 123, 164, 490
MslI CAYNNNNRTG 1 cut(s) 302
MspI CCGG 2 cut(s) 212, 245
MspR9I CCNGG 1 cut(s) 212
NciI CCSGG 1 cut(s) 212
NdeII GATC 3 cut(s) 128, 241, 274
NlaIII CATG 3 cut(s) 116, 307, 379
NmeAIII GCCGAG 1 cut(s) 314
PagI TCATGA 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 448
PfeI GAWTC 2 cut(s) 33, 217
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 448
SaqAI TTAA 3 cut(s) 123, 164, 490
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 3 cut(s) 128, 241, 274
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 2 cut(s) 175, 252
SfaNI GCATC 2 cut(s) 192, 306
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 4 cut(s) 149, 349, 432, 487
SsiI CCGC 1 cut(s) 261
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 106, 131
TasI AATT 4 cut(s) 149, 349, 432, 487
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 2 cut(s) 33, 217
Tru1I TTAA 3 cut(s) 123, 164, 490
Tru9I TTAA 3 cut(s) 123, 164, 490
TspDTI ATGAA 1 cut(s) 129
XagI CCTNNNNNAGG 1 cut(s) 410
XapI RAATTY 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.