Rorug07G0160200

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000890
Physical Location & Seq
Forward (+)
12770901 .. 12774609
3709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0160200.1

Sequence Viewer

Length: 708 bp
ATGCTAGAGCCTGAGCTGTGTGCTTCTAGGGTGCTGTCACCTTCTCATGAGGAAAGTGGGGATGATGAGCTTTCAGTTCTTCCCAGGCACACTAAGGTCATTGTTACTGGGAACAACAGAACAAAGTCTGTGTTGGTGGGTCTACAGGGAGTGGTCAAGAAGGCTGTTGGGCTTGGTGGTTGGCACTGGCTGGTTCTGAAAAATGGTGTTGAAGTCAAGCTGCAAAGGAATGCGTTGAGTGTGCTGGAACATCCTACAGGGAATGAGGAAGATTTTGACAATGATTATGATAACTCTAGCAGTAGCTCTGAACTGGGTGTGAAGGAGAATGATTTCACTAGGAGTCTTGAGTTCCACAGACATGATAAACCAAGATTTCGGTATCCAAAATCATATGTTCCATCCACAGCAACCAAGTCGATTTATCGTGGCAGTTATCAAGAATTTCAGTCCATCCACAAACCTCAGCTGAGAGTAAACATGGCAAAGCTAGGAACAAGCACTTTGCGGAGGTACTGCAGGCACTTCAACCTTGTAAGCAGCCATCCTAATCCAACAAGGGAGCAACTGATTAACGTTGTGCAACGACATTTTACATCACAGCTGATGCGATTGGATGAGGTATCAGTGATCACTGAATTTGTCAATGCTGCAAGGAGGCGCAAATCTGCCGAGTTGGCCAGGAAACGTACAGAACGAGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

235

Amino Acids

26.93

Weight (kDa)

9.56

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP30_Sin3_bdg PF13867 164 - 219 2.9e-19 Sin3 binding region of histone deacetylase complex subunit SAP30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 142
AciI CCGC 1 cut(s) 508
AclI AACGTT 1 cut(s) 576
AcoI YGGCCR 1 cut(s) 678
AcsI RAATTY 2 cut(s) 443, 638
AfaI GTAC 2 cut(s) 515, 691
AgsI TTSAA 2 cut(s) 212, 529
AjnI CCWGG 2 cut(s) 83, 680
AluBI AGCT 7 cut(s) 16, 70, 220, 306, 469, 490, 604
AluI AGCT 7 cut(s) 16, 70, 220, 306, 469, 490, 604
AoxI GGCC 1 cut(s) 678
ApeKI GCWGC 3 cut(s) 220, 540, 650
ApoI RAATTY 2 cut(s) 443, 638
Asp700I GAANNNNTTC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 663
AsuHPI GGTGA 1 cut(s) 30
BalI TGGCCA 1 cut(s) 680
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 207, 552, 637
BccI CCATC 3 cut(s) 409, 461, 552
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BciT130I CCWGG 2 cut(s) 85, 682
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 1 cut(s) 630
BfaI CTAG 5 cut(s) 5, 27, 297, 339, 491
BfmI CTRYAG 3 cut(s) 143, 255, 517
BfuI GTATCC 1 cut(s) 393
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 3 cut(s) 221, 541, 651
BlsI GCNGC 3 cut(s) 222, 542, 652
Bme1390I CCNGG 2 cut(s) 85, 682
BmrFI CCNGG 2 cut(s) 85, 682
BmrI ACTGGG 2 cut(s) 117, 323
BmsI GCATC 1 cut(s) 597
BmuI ACTGGG 2 cut(s) 117, 323
Bpu10I CCTNAGC 2 cut(s) 12, 465
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 112, 191, 318
BseBI CCWGG 2 cut(s) 85, 682
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 6 cut(s) 67, 250, 401, 453, 544, 622
BseMII CTCAG 2 cut(s) 461, 479
BseNI ACTGG 3 cut(s) 112, 191, 318
BseXI GCAGC 3 cut(s) 207, 552, 637
BshFI GGCC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 1 cut(s) 680
Bsp143I GATC 1 cut(s) 630
BspACI CCGC 1 cut(s) 508
BspANI GGCC 1 cut(s) 680
BspCNI CTCAG 3 cut(s) 4, 462, 478
BspHI TCATGA 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 521
BsrI ACTGG 3 cut(s) 112, 191, 318
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 85, 682
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 4 cut(s) 12, 93, 465, 470
BstF5I GGATG 6 cut(s) 67, 250, 401, 453, 544, 622
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 1 cut(s) 633
BstMBI GATC 1 cut(s) 630
BstMWI GCNNNNNNNGC 1 cut(s) 677
BstNI CCWGG 2 cut(s) 85, 682
BstSCI CCNGG 2 cut(s) 83, 680
BstSFI CTRYAG 3 cut(s) 143, 255, 517
BstV1I GCAGC 3 cut(s) 207, 552, 637
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 680
BtsCI GGATG 6 cut(s) 67, 250, 401, 453, 544, 622
BtsIMutI CAGTG 3 cut(s) 184, 633, 633
Cac8I GCNNGC 1 cut(s) 521
CciI TCATGA 1 cut(s) 46
CfoI GCGC 1 cut(s) 663
Csp6I GTAC 2 cut(s) 514, 690
CviAII CATG 3 cut(s) 47, 362, 481
CviQI GTAC 2 cut(s) 514, 690
DdeI CTNAG 4 cut(s) 12, 93, 465, 470
DpnI GATC 1 cut(s) 632
DpnII GATC 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 678
EcoRII CCWGG 2 cut(s) 83, 680
FaeI CATG 3 cut(s) 50, 365, 484
FaiI YATR 6 cut(s) 48, 288, 363, 394, 396, 482
FatI CATG 3 cut(s) 46, 361, 480
FauNDI CATATG 1 cut(s) 394
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 221, 541, 651
FokI GGATG 6 cut(s) 74, 237, 388, 440, 531, 629
Fsp4HI GCNGC 3 cut(s) 221, 541, 651
FspBI CTAG 5 cut(s) 5, 27, 297, 339, 491
GlaI GCGC 1 cut(s) 662
GluI GCNGC 3 cut(s) 221, 541, 651
HaeIII GGCC 1 cut(s) 680
HhaI GCGC 1 cut(s) 663
Hin1II CATG 3 cut(s) 50, 365, 484
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
HinfI GANTC 1 cut(s) 343
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 2 cut(s) 143, 478
Hpy188I TCNGA 2 cut(s) 198, 310
Hpy188III TCNNGA 4 cut(s) 47, 157, 347, 440
Hpy8I GTNNAC 2 cut(s) 143, 478
HpyAV CCTTC 3 cut(s) 51, 154, 316
HpyCH4IV ACGT 2 cut(s) 576, 688
HpyCH4V TGCA 4 cut(s) 223, 519, 583, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 677
HpyF3I CTNAG 4 cut(s) 12, 93, 465, 470
HpySE526I ACGT 2 cut(s) 576, 688
Hsp92II CATG 3 cut(s) 50, 365, 484
HspAI GCGC 1 cut(s) 661
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 1 cut(s) 630
LmnI GCTCC 1 cut(s) 562
Lsp1109I GCAGC 3 cut(s) 207, 552, 637
LweI GCATC 1 cut(s) 597
MaeI CTAG 5 cut(s) 5, 27, 297, 339, 491
MaeII ACGT 2 cut(s) 576, 688
MaeIII GTNAC 2 cut(s) 36, 103
MalI GATC 1 cut(s) 632
MboI GATC 1 cut(s) 630
MboII GAAGA 2 cut(s) 71, 281
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 2 cut(s) 443, 638
MluNI TGGCCA 1 cut(s) 680
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 1 cut(s) 578
MnlI CCTC 6 cut(s) 43, 259, 474, 504, 613, 651
Mox20I TGGCCA 1 cut(s) 680
MroXI GAANNNNTTC 1 cut(s) 332
MscI TGGCCA 1 cut(s) 680
MseI TTAA 1 cut(s) 573
MslI CAYNNNNRTG 1 cut(s) 360
Msp20I TGGCCA 1 cut(s) 680
MspA1I CMGCKG 2 cut(s) 469, 604
MspR9I CCNGG 2 cut(s) 85, 682
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 2 cut(s) 85, 682
MwoI GCNNNNNNNGC 1 cut(s) 677
NdeI CATATG 1 cut(s) 394
NdeII GATC 1 cut(s) 630
NlaIII CATG 3 cut(s) 50, 365, 484
NmeAIII GCCGAG 1 cut(s) 697
NmuCI GTSAC 1 cut(s) 36
PagI TCATGA 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 694
PctI GAATGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 332
PkrI GCNGC 3 cut(s) 222, 542, 652
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 83, 680
PspGI CCWGG 2 cut(s) 83, 680
PstI CTGCAG 1 cut(s) 521
PvuII CAGCTG 2 cut(s) 469, 604
RsaI GTAC 2 cut(s) 515, 691
RsaNI GTAC 2 cut(s) 514, 690
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 3 cut(s) 221, 541, 651
Sau3AI GATC 1 cut(s) 630
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 85, 682
SfaNI GCATC 1 cut(s) 597
SfcI CTRYAG 3 cut(s) 143, 255, 517
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 2 cut(s) 443, 638
SsiI CCGC 1 cut(s) 508
SspMI CTAG 5 cut(s) 5, 27, 297, 339, 491
StyD4I CCNGG 2 cut(s) 83, 680
TaiI ACGT 2 cut(s) 579, 691
TaqI TCGA 1 cut(s) 419
TasI AATT 2 cut(s) 443, 638
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 3 cut(s) 191, 633, 640
TseFI GTSAC 1 cut(s) 36
TseI GCWGC 3 cut(s) 220, 540, 650
Tsp45I GTSAC 1 cut(s) 36
TspRI CASTG 3 cut(s) 191, 633, 640
XapI RAATTY 2 cut(s) 443, 638
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 5 cut(s) 5, 27, 297, 339, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.