FvH4_7g26563

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000890
Physical Location & Seq
Forward (+)
20036549 .. 20036872
324 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26563.t1

Sequence Viewer

Length: 324 bp
ATGTGTAAATTCCCACATGGTTGCAACACTTTGGAAGTTGAAGTAGATTCTCTTGTTGCAGTCAAATTGGTTCTTTCTGCTATTGATCGCCTTCATCCTCTCTACAGTCTTATAGCAAATTGCCAGGAGTTTCTTAGTAGGAATTGGAATGTGTCCCTTATTCATTTTTACAGAGAAAGTAATTCAGTGGCTGACTTGCTAGCAAGCATTGGTCATGGTTATGAGCCTAGATGCAGATTCTTTAGCTCCCCTCCTAATGATGTTATCCCCCTCCTGGAAGCTGATTCTTCCGGCTCTTCCAAGCCTAGATTAGTTGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

108

Amino Acids

11.95

Weight (kDa)

6.03

Isoelectric Point (pI)

24.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 6 - 69 1.5e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 2 cut(s) 123, 273
AluBI AGCT 2 cut(s) 246, 281
AluI AGCT 2 cut(s) 246, 281
AlwNI CAGNNNCTG 1 cut(s) 191
ApoI RAATTY 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 125, 275
BfaI CTAG 3 cut(s) 200, 228, 306
BfmI CTRYAG 1 cut(s) 103
Bme1390I CCNGG 2 cut(s) 125, 275
BmrFI CCNGG 2 cut(s) 125, 275
BmsI GCATC 1 cut(s) 221
BmtI GCTAGC 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 274
BseBI CCWGG 2 cut(s) 125, 275
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 85
BspOI GCTAGC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 301
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 2 cut(s) 125, 275
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 201, 205
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstNI CCWGG 2 cut(s) 125, 275
BstSCI CCNGG 2 cut(s) 123, 273
BstSFI CTRYAG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 201, 205
CaiI CAGNNNCTG 1 cut(s) 191
CviAII CATG 2 cut(s) 17, 215
CviJI RGCY 6 cut(s) 191, 226, 246, 281, 294, 304
CviKI_1 RGCY 6 cut(s) 191, 226, 246, 281, 294, 304
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 123, 273
FaeI CATG 2 cut(s) 20, 218
FaiI YATR 4 cut(s) 18, 113, 216, 222
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 16, 214
FokI GGATG 1 cut(s) 81
FspBI CTAG 3 cut(s) 200, 228, 306
HapII CCGG 1 cut(s) 291
Hin1II CATG 2 cut(s) 20, 218
HinfI GANTC 3 cut(s) 47, 237, 284
HpaII CCGG 1 cut(s) 291
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 3 cut(s) 24, 59, 234
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 2 cut(s) 20, 218
Kzo9I GATC 1 cut(s) 85
LguI GCTCTTC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 5 cut(s) 110, 137, 260, 287, 304
LweI GCATC 1 cut(s) 221
MaeI CTAG 3 cut(s) 200, 228, 306
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 279, 288
MluCI AATT 5 cut(s) 8, 65, 118, 142, 181
MnlI CCTC 3 cut(s) 108, 261, 281
MslI CAYNNNNRTG 1 cut(s) 219
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 125, 275
MvaI CCWGG 2 cut(s) 125, 275
NdeII GATC 1 cut(s) 85
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 2 cut(s) 20, 218
PciSI GCTCTTC 1 cut(s) 301
PfeI GAWTC 3 cut(s) 47, 237, 284
PfoI TCCNGGA 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 123, 273
PspGI CCWGG 2 cut(s) 123, 273
PstNI CAGNNNCTG 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 125, 275
SetI ASST 2 cut(s) 248, 283
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 5 cut(s) 8, 65, 118, 142, 181
SspMI CTAG 3 cut(s) 200, 228, 306
StyD4I CCNGG 2 cut(s) 123, 273
TaaI ACNGT 1 cut(s) 107
TasI AATT 5 cut(s) 8, 65, 118, 142, 181
TfiI GAWTC 3 cut(s) 47, 237, 284
TscAI CASTG 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 83, 152
TspRI CASTG 1 cut(s) 192
XapI RAATTY 1 cut(s) 8
XspI CTAG 3 cut(s) 200, 228, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.