Rmu_sc0012066.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012066.1
OG0000890
Physical Location & Seq
Forward (+)
1869 .. 3578
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012066.1_g000001.1.cds

Sequence Viewer

Length: 612 bp
atgacggatagggcccgaggaaagtttcgaggcggccaggacggtcagggcccgaggaaagaatcagggctaccaaggcctaagaaaagaatcagggcggccaaggctcgaggaaagaatcgggacagccagggcttgaggaaatattcgaggcaagattcaaaacagaatagaagtggtcagatttatagaactcgaggggctcttggatttcagattttgttgctaatagctaaaatattggaatctgaaatatggggtttattgcttgagcttaagatggctattgataaccattgcaaccaactgatggttgaatgtgattatgctattttggtggaaacggtgaacaatggcattgatgatttacatcctttgaaatctatgattgatagatgcatgtatcttcaaggtaacttctctgtgtgtgaaatcaagcatgtgtacagagaagtgaatattattgctgatcatgacattctctccaaggccaattggaattctgactttggagttcaatctctgtcgcaacctcctccacttgtcatcggtgtgttattgaatgacttgtgtgacactcctagatttagagaggtagctatgactacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

203

Amino Acids

23.01

Weight (kDa)

9.37

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 310
AciI CCGC 2 cut(s) 33, 98
AcoI YGGCCR 2 cut(s) 34, 99
AcsI RAATTY 1 cut(s) 499
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 1 cut(s) 310
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 6 cut(s) 162, 317, 379, 410, 518, 562
AjnI CCWGG 2 cut(s) 36, 129
AluBI AGCT 3 cut(s) 233, 274, 599
AluI AGCT 3 cut(s) 233, 274, 599
Ama87I CYCGRG 4 cut(s) 15, 52, 108, 195
AoxI GGCC 6 cut(s) 12, 34, 49, 77, 99, 489
ApaI GGGCCC 2 cut(s) 16, 53
ApoI RAATTY 1 cut(s) 499
AspS9I GGNCC 4 cut(s) 12, 13, 49, 50
AsuHPI GGTGA 1 cut(s) 358
AvaI CYCGRG 4 cut(s) 15, 52, 108, 195
BaeGI GKGCMC 2 cut(s) 16, 53
BanII GRGCYC 3 cut(s) 16, 53, 205
BccI CCATC 2 cut(s) 274, 304
BciT130I CCWGG 2 cut(s) 38, 131
BclI TGATCA 1 cut(s) 469
BfaI CTAG 1 cut(s) 582
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 34, 99
BlsI GCNGC 2 cut(s) 35, 100
Bme1390I CCNGG 2 cut(s) 38, 131
BmeT110I CYCGRG 4 cut(s) 15, 52, 108, 195
BmgT120I GGNCC 4 cut(s) 12, 13, 49, 50
BmiI GGNNCC 2 cut(s) 14, 51
BmrFI CCNGG 2 cut(s) 38, 131
BmsI GCATC 1 cut(s) 386
BpuEI CTTGAG 2 cut(s) 157, 290
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 6 cut(s) 16, 53, 74, 102, 130, 486
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 2 cut(s) 38, 131
BseDI CCNNGG 6 cut(s) 16, 53, 74, 102, 130, 486
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 525
BseSI GKGCMC 2 cut(s) 16, 53
BshFI GGCC 6 cut(s) 14, 36, 51, 79, 101, 491
BsiHKCI CYCGRG 4 cut(s) 15, 52, 108, 195
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 6 cut(s) 14, 36, 51, 79, 101, 491
BsoBI CYCGRG 4 cut(s) 15, 52, 108, 195
Bsp120I GGGCCC 2 cut(s) 12, 49
Bsp1286I GDGCHC 3 cut(s) 16, 53, 205
Bsp1407I TGTACA 1 cut(s) 444
Bsp143I GATC 1 cut(s) 469
BspACI CCGC 2 cut(s) 33, 98
BspANI GGCC 6 cut(s) 14, 36, 51, 79, 101, 491
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 2 cut(s) 14, 51
BspTI CTTAAG 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 295
BsrGI TGTACA 1 cut(s) 444
BssECI CCNNGG 6 cut(s) 16, 53, 74, 102, 130, 486
BssMI GATC 1 cut(s) 469
BssT1I CCWWGG 3 cut(s) 74, 102, 486
Bst2UI CCWGG 2 cut(s) 38, 131
Bst4CI ACNGT 2 cut(s) 44, 346
BstAFI CTTAAG 1 cut(s) 275
BstAUI TGTACA 1 cut(s) 444
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 1 cut(s) 472
BstMBI GATC 1 cut(s) 469
BstMWI GCNNNNNNNGC 2 cut(s) 76, 104
BstNI CCWGG 2 cut(s) 38, 131
BstNSI RCATGY 2 cut(s) 403, 443
BstSCI CCNGG 2 cut(s) 36, 129
BstSLI GKGCMC 2 cut(s) 16, 53
BsuRI GGCC 6 cut(s) 14, 36, 51, 79, 101, 491
BtsCI GGATG 1 cut(s) 370
CciI TCATGA 1 cut(s) 472
Cfr13I GGNCC 4 cut(s) 12, 13, 49, 50
Csp6I GTAC 1 cut(s) 445
CviAII CATG 3 cut(s) 400, 440, 473
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
EaeI YGGCCR 2 cut(s) 34, 99
Eco130I CCWWGG 3 cut(s) 74, 102, 486
Eco147I AGGCCT 1 cut(s) 79
Eco24I GRGCYC 3 cut(s) 16, 53, 205
Eco88I CYCGRG 4 cut(s) 15, 52, 108, 195
EcoO109I RGGNCCY 2 cut(s) 12, 49
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 2 cut(s) 36, 129
EcoT14I CCWWGG 3 cut(s) 74, 102, 486
EcoT22I ATGCAT 1 cut(s) 401
EcoT38I GRGCYC 3 cut(s) 16, 53, 205
ErhI CCWWGG 3 cut(s) 74, 102, 486
FaeI CATG 3 cut(s) 403, 443, 476
FaiI YATR 8 cut(s) 189, 256, 327, 386, 401, 441, 474, 602
FaqI GGGAC 1 cut(s) 137
FatI CATG 3 cut(s) 399, 439, 472
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 2 cut(s) 34, 99
FokI GGATG 1 cut(s) 357
FriOI GRGCYC 3 cut(s) 16, 53, 205
Fsp4HI GCNGC 2 cut(s) 34, 99
FspBI CTAG 1 cut(s) 582
GluI GCNGC 2 cut(s) 34, 99
HaeIII GGCC 6 cut(s) 14, 36, 51, 79, 101, 491
Hin1II CATG 3 cut(s) 403, 443, 476
HinfI GANTC 5 cut(s) 62, 90, 118, 158, 245
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 2 cut(s) 349, 445
Hpy188I TCNGA 4 cut(s) 183, 216, 250, 505
Hpy188III TCNNGA 2 cut(s) 122, 473
Hpy8I GTNNAC 2 cut(s) 349, 445
HpyCH4III ACNGT 2 cut(s) 44, 346
HpyCH4V TGCA 2 cut(s) 300, 399
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 104
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 3 cut(s) 403, 443, 476
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 1 cut(s) 469
LpnPI CCDG 7 cut(s) 23, 32, 50, 51, 79, 116, 143
LweI GCATC 1 cut(s) 386
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 2 cut(s) 413, 572
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MboII GAAGA 1 cut(s) 398
MfeI CAATTG 1 cut(s) 493
MhlI GDGCHC 3 cut(s) 16, 53, 205
MluCI AATT 2 cut(s) 493, 499
Mph1103I ATGCAT 1 cut(s) 401
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 551
MspCI CTTAAG 1 cut(s) 275
MspR9I CCNGG 2 cut(s) 38, 131
MunI CAATTG 1 cut(s) 493
MvaI CCWGG 2 cut(s) 38, 131
MwoI GCNNNNNNNGC 2 cut(s) 76, 104
NdeII GATC 1 cut(s) 469
NlaIII CATG 3 cut(s) 403, 443, 476
NlaIV GGNNCC 2 cut(s) 14, 51
NmuCI GTSAC 1 cut(s) 572
NsiI ATGCAT 1 cut(s) 401
NspI RCATGY 2 cut(s) 403, 443
PaeR7I CTCGAG 2 cut(s) 108, 195
PagI TCATGA 1 cut(s) 472
PceI AGGCCT 1 cut(s) 79
PfeI GAWTC 5 cut(s) 62, 90, 118, 158, 245
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 2 cut(s) 35, 100
Psp6I CCWGG 2 cut(s) 36, 129
PspGI CCWGG 2 cut(s) 36, 129
PspN4I GGNNCC 2 cut(s) 14, 51
PspOMI GGGCCC 2 cut(s) 12, 49
PspPI GGNCC 4 cut(s) 12, 13, 49, 50
PspXI VCTCGAGB 2 cut(s) 108, 195
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 551
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 2 cut(s) 34, 99
Sau3AI GATC 1 cut(s) 469
Sau96I GGNCC 4 cut(s) 12, 13, 49, 50
ScrFI CCNGG 2 cut(s) 38, 131
SduI GDGCHC 3 cut(s) 16, 53, 205
SetI ASST 6 cut(s) 235, 276, 415, 535, 597, 601
SfaNI GCATC 1 cut(s) 386
Sfr274I CTCGAG 2 cut(s) 108, 195
SlaI CTCGAG 2 cut(s) 108, 195
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 5 cut(s) 108, 136, 195, 269, 275
SmoI CTYRAG 5 cut(s) 108, 136, 195, 269, 275
Sse9I AATT 2 cut(s) 493, 499
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 2 cut(s) 33, 98
SspI AATATT 3 cut(s) 146, 240, 460
SspMI CTAG 1 cut(s) 582
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 36, 129
StyI CCWWGG 3 cut(s) 74, 102, 486
TaaI ACNGT 2 cut(s) 44, 346
TaqI TCGA 4 cut(s) 28, 109, 149, 196
TasI AATT 2 cut(s) 493, 499
TatI WGTACW 1 cut(s) 444
TauI GCSGC 2 cut(s) 36, 101
TfiI GAWTC 5 cut(s) 62, 90, 118, 158, 245
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseFI GTSAC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 572
TspGWI ACGGA 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 310
Vha464I CTTAAG 1 cut(s) 275
XapI RAATTY 1 cut(s) 499
XceI RCATGY 2 cut(s) 403, 443
XhoI CTCGAG 2 cut(s) 108, 195
XspI CTAG 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.