Rh3AG161100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000890
Physical Location & Seq
Reverse (-)
14830140 .. 14830872
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG161100.1

Sequence Viewer

Length: 402 bp
ATGGAGAATGGGTTTTCTGCCAAGTTGGGCATTAGTCAAGTTGTTGAAGCTGAACTTTGGGGGCTTCTGAAAGGAATGAAAATGGCTTGGCAGAATGGTCGTAGACAGTTGAAAATAGAAATGGATTCACTTGTTGTGGTCAAGTTGGTTTTCTCTCCTATTGATCATCTCCATCCTCTTTATAGTATTGTGACAAGTTGTCAAGAGTTGTTGAGTAGGGATTGGAATGTGTCCCTTACCCATGTTTACAGAGAGTGTAATTCAATGGCTAATTTGTTAGCAAATATTGGGCATGGTTATGAGACTGGCTGCAGATTCTTTAGCTTCCCTCCTGCTGATGTCGTGCCTCTTTTGGAAGCTGATCTATTGGGCTTGTCTAAGCCAAGATTAATTGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

133

Amino Acids

14.93

Weight (kDa)

6.4

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 11 - 95 6.8e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 103
AgsI TTSAA 3 cut(s) 47, 112, 264
AhdI GACNNNNNGTC 1 cut(s) 198
AluBI AGCT 3 cut(s) 50, 324, 359
AluI AGCT 3 cut(s) 50, 324, 359
Alw26I GTCTC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 309
AseI ATTAAT 1 cut(s) 389
BbvI GCAGC 1 cut(s) 296
BccI CCATC 1 cut(s) 180
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 310
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
BmeRI GACNNNNNGTC 1 cut(s) 198
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 296
BslFI GGGAC 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 163, 361
BspMAI CTGCAG 1 cut(s) 314
BsrI ACTGG 1 cut(s) 310
BssMI GATC 2 cut(s) 163, 361
Bst4CI ACNGT 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 2 cut(s) 166, 364
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 2 cut(s) 163, 361
BstSFI CTRYAG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 172
CviAII CATG 2 cut(s) 242, 293
CviJI RGCY 9 cut(s) 50, 64, 86, 269, 309, 324, 359, 372, 382
CviKI_1 RGCY 9 cut(s) 50, 64, 86, 269, 309, 324, 359, 372, 382
DdeI CTNAG 1 cut(s) 378
DpnI GATC 2 cut(s) 165, 363
DpnII GATC 2 cut(s) 163, 361
DriI GACNNNNNGTC 1 cut(s) 198
Eam1105I GACNNNNNGTC 1 cut(s) 198
FaeI CATG 2 cut(s) 245, 296
FaiI YATR 4 cut(s) 183, 243, 294, 300
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 1 cut(s) 217
FatI CATG 2 cut(s) 241, 292
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 310
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 310
GluI GCNGC 1 cut(s) 310
Hin1II CATG 2 cut(s) 245, 296
HinfI GANTC 2 cut(s) 125, 315
Hpy166II GTNNAC 2 cut(s) 104, 247
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 104, 247
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 312
HpyF3I CTNAG 1 cut(s) 378
Hsp92II CATG 2 cut(s) 245, 296
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 2 cut(s) 163, 361
LpnPI CCDG 2 cut(s) 291, 345
Lsp1109I GCAGC 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 165, 363
MboI GATC 2 cut(s) 163, 361
MluCI AATT 3 cut(s) 259, 271, 390
MnlI CCTC 3 cut(s) 186, 339, 357
MseI TTAA 1 cut(s) 389
MslI CAYNNNNRTG 1 cut(s) 297
NdeII GATC 2 cut(s) 163, 361
NlaIII CATG 2 cut(s) 245, 296
NmuCI GTSAC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 125, 315
PkrI GCNGC 1 cut(s) 311
PshBI ATTAAT 1 cut(s) 389
PstI CTGCAG 1 cut(s) 314
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 1 cut(s) 310
Sau3AI GATC 2 cut(s) 163, 361
SetI ASST 3 cut(s) 52, 326, 361
SfcI CTRYAG 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 3 cut(s) 259, 271, 390
SspI AATATT 1 cut(s) 286
TaaI ACNGT 1 cut(s) 108
TasI AATT 3 cut(s) 259, 271, 390
TfiI GAWTC 2 cut(s) 125, 315
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 309
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 92
VspI ATTAAT 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.