Rh5CG315800

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000890
Physical Location & Seq
Forward (+)
34974177 .. 34974494
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG315800.1

Sequence Viewer

Length: 318 bp
ATGAAATGGGAGAATATATGGGTGGCAGGATTTACGGAGAATTTGGGAACTGGTAGAGTTATTGAGGCAAAGCTTTGGGCTTTGTATAGAGGATTGGAGCTTGCTTGGAAATCTGGGTGGGCTCCTCTTGAGGTGGGGTGTGACTCAAATGTGGTTGTAACTGTTGTAATGAATCAAGTGGTGCACAAGAACCACACTCTATTTCAATTGGTTAAAAGCTGCCAGGAGCTCCTTGAGCAAAATTGGAAATGTTCGCTAGGGTGTGCATTGGCGGAACAAAACTGTGTGGCCATATTTCTAGCCAGTTTTGCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

105

Amino Acids

11.75

Weight (kDa)

6.06

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 12 - 104 3.5e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 40
AgsI TTSAA 1 cut(s) 206
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 4 cut(s) 73, 100, 219, 229
AluI AGCT 4 cut(s) 73, 100, 219, 229
Alw21I GWGCWC 2 cut(s) 186, 231
Alw44I GTGCAC 1 cut(s) 182
AoxI GGCC 1 cut(s) 288
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 290
BanII GRGCYC 2 cut(s) 124, 231
Bbv12I GWGCWC 2 cut(s) 186, 231
BbvI GCAGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 224
BfaI CTAG 2 cut(s) 257, 299
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 149, 254
Bse1I ACTGG 2 cut(s) 55, 303
BseBI CCWGG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 55, 303
BseRI GAGGAG 1 cut(s) 114
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 1 cut(s) 206
BshFI GGCC 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 186, 231
BsnI GGCC 1 cut(s) 290
Bsp1286I GDGCHC 3 cut(s) 124, 186, 231
BspACI CCGC 1 cut(s) 272
BspANI GGCC 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 123
BsrI ACTGG 2 cut(s) 55, 303
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 163, 284
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 315
BstMWI GCNNNNNNNGC 2 cut(s) 235, 308
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 206
BsuRI GGCC 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 102
CviJI RGCY 8 cut(s) 73, 80, 100, 122, 219, 229, 290, 302
CviKI_1 RGCY 8 cut(s) 73, 80, 100, 122, 219, 229, 290, 302
DdeI CTNAG 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 288
EciI GGCGGA 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 2 cut(s) 124, 231
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 222
EcoT38I GRGCYC 2 cut(s) 124, 231
FaiI YATR 4 cut(s) 17, 19, 87, 293
Fnu4HI GCNGC 1 cut(s) 220
FriOI GRGCYC 2 cut(s) 124, 231
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 2 cut(s) 257, 299
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 1 cut(s) 290
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 143, 172
Hpy166II GTNNAC 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 163, 284
HpyCH4V TGCA 3 cut(s) 184, 266, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 308
HpyF3I CTNAG 1 cut(s) 315
LmnI GCTCC 4 cut(s) 97, 127, 226, 234
LpnPI CCDG 5 cut(s) 12, 36, 99, 209, 236
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 2 cut(s) 257, 299
MaeIII GTNAC 2 cut(s) 140, 157
MfeI CAATTG 1 cut(s) 206
MhlI GDGCHC 3 cut(s) 124, 186, 231
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 3 cut(s) 40, 206, 241
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 4 cut(s) 58, 83, 124, 135
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 224
MunI CAATTG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 235, 308
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 123
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 220
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 3 cut(s) 124, 186, 231
SetI ASST 6 cut(s) 75, 102, 135, 221, 231, 316
SmlI CTYRAG 2 cut(s) 128, 233
SmoI CTYRAG 2 cut(s) 128, 233
Sse9I AATT 3 cut(s) 40, 206, 241
SsiI CCGC 1 cut(s) 272
SspMI CTAG 2 cut(s) 257, 299
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 163, 284
TasI AATT 3 cut(s) 40, 206, 241
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 17, 185
TspGWI ACGGA 1 cut(s) 50
VneI GTGCAC 1 cut(s) 182
XapI RAATTY 1 cut(s) 40
XspI CTAG 2 cut(s) 257, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.