FvH4_1g21661

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000890
Physical Location & Seq
Forward (+)
13635681 .. 13636126
446 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21661.t1

Sequence Viewer

Length: 342 bp
ATGGAGCTTTCCATCCATGGAGCAGTTCCGGAATTAGAGAACACATGCAGTTTGCTACTTTCCTTAAGAGAACATATACAAACCAAAAGAAGGTTGGGAAAGAAACAAAATGTTACGGCGTTGAATGGTTTCTCTGCCAAGTTAAGTATTGGACAAGTTCTTGAAGCTGAACTGTGGGGTCTTTCGAAAGGTATGGAGATGGCTTGGCAGCATGGCTGCAATTACTTGAAAGTTGAAGTGGATTCTCTTGTAGCAGTCAAATTGGCTCTTTCTGTGATTGATCATCTTCATTCTCTCTACATTCTTGTGGCAAATTGCCAGAAGTTTCTCAGTAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

114

Amino Acids

12.6

Weight (kDa)

7.77

Isoelectric Point (pI)

23.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 49 - 107 1.6e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 90
AflII CTTAAG 1 cut(s) 64
AgsI TTSAA 4 cut(s) 124, 164, 229, 236
AluBI AGCT 2 cut(s) 7, 167
AluI AGCT 2 cut(s) 7, 167
Aor13HI TCCGGA 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 208, 216
Asp700I GAANNNNTTC 1 cut(s) 128
AsuII TTCGAA 1 cut(s) 185
BbvI GCAGC 2 cut(s) 203, 220
BccI CCATC 2 cut(s) 20, 193
BceAI ACGGC 1 cut(s) 132
BclI TGATCA 1 cut(s) 280
BfrI CTTAAG 1 cut(s) 64
BisI GCNGC 2 cut(s) 209, 217
BlsI GCNGC 2 cut(s) 210, 218
Bpu14I TTCGAA 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 16
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 90
BseAI TCCGGA 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 203, 220
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 90
Bsp119I TTCGAA 1 cut(s) 185
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 280
Bsp19I CCATGG 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 342
BspEI TCCGGA 1 cut(s) 28
BspT104I TTCGAA 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 203, 220
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 12
CviAII CATG 3 cut(s) 17, 45, 212
CviJI RGCY 5 cut(s) 7, 167, 203, 216, 266
CviKI_1 RGCY 5 cut(s) 7, 167, 203, 216, 266
DdeI CTNAG 1 cut(s) 329
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 3 cut(s) 20, 48, 215
FaiI YATR 6 cut(s) 18, 46, 75, 77, 194, 213
FatI CATG 3 cut(s) 16, 44, 211
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 209, 217
Fsp4HI GCNGC 2 cut(s) 209, 217
GluI GCNGC 2 cut(s) 209, 217
HapII CCGG 1 cut(s) 29
Hin1II CATG 3 cut(s) 20, 48, 215
HinfI GANTC 1 cut(s) 242
HpaII CCGG 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 29, 161
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 48, 219
HpyF3I CTNAG 1 cut(s) 329
Hsp92II CATG 3 cut(s) 20, 48, 215
Kpn2I TCCGGA 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 2 cut(s) 4, 20
LpnPI CCDG 2 cut(s) 42, 332
Lsp1109I GCAGC 2 cut(s) 203, 220
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 1 cut(s) 278
MluCI AATT 4 cut(s) 32, 220, 260, 313
MroI TCCGGA 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 2 cut(s) 65, 143
MslI CAYNNNNRTG 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 64
MspI CCGG 1 cut(s) 29
NcoI CCATGG 1 cut(s) 16
NdeII GATC 1 cut(s) 280
NlaIII CATG 3 cut(s) 20, 48, 215
NspI RCATGY 1 cut(s) 48
NspV TTCGAA 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 210, 218
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 2 cut(s) 65, 143
SatI GCNGC 2 cut(s) 209, 217
Sau3AI GATC 1 cut(s) 280
SetI ASST 4 cut(s) 9, 95, 169, 193
SfuI TTCGAA 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 4 cut(s) 32, 220, 260, 313
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 185
TasI AATT 4 cut(s) 32, 220, 260, 313
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 2 cut(s) 65, 143
Tru9I TTAA 2 cut(s) 65, 143
TseI GCWGC 2 cut(s) 208, 216
TspDTI ATGAA 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 64
XceI RCATGY 1 cut(s) 48
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.