RchiOBHm_Chr2g0146161

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000890
Physical Location & Seq
Forward (+)
63868548 .. 63870135
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51593

Sequence Viewer

Length: 1071 bp
ATGGCCACTTCACTGTTAAATCAGCCTATCTCTACTTGGTTAAGGAAGAAAGCACATTGGACTTTCCCTGGTTTTTTTTCATGGAAATTACAAATACCTCCTAAACTGAAATATTTCTTCTGGTTAGTCTGTCATGGTAAACTCCTCACCAATGTTGAAAGAGTTAAAAGAAGATTTGCTGCCAATTATTATTGTCCTGTTTGCCATGATCAACCTGAGACAATTTTACACATGCTTAGAGATTGCCCTGCTGCCCGGATGATTTGGAACAGTGTCATATGCTTAGATTCTATTTCTAGGAGTATGCAGCTTGATTGGTATGGGTGGTTCTTTGCTAACTCTCAATGCAAGAAACTATGTTATGGGAATCTTCAATGGTGCTCAATTTTTGTGTATACTTGCTGGCACATATGGAAGTGGAGGAATAAAAAGGTGTTTGATGTGGGTTTCCACTACCCTTTTAATCCTGGGAAAGTTGTTATTGATTCTGCTAGGGAATGGAAATCTGCCAACACTCTCAAGCCTCATCAGTCTAGTAAAACTTCTGTCAGGTTGTTTTGGAAGAAACCACCTATGCATTACTTTAAATTAAATGTTGATGGTGCTAGAAGTATTAATGGGAAAATTGGTGCTGGCGGTGTCTTAAGGGATTCTACGGGTGCTTGGGTTTCTGGGTTTTATGCTAATCTTGGATGCGGATCTGTCCTTCAGGCGGAAGCTTGGGGGTTACTTCTGGGTCTACAAATGGCCATCTCTCATCATGCCCATCATCTTCTGGTGGAAAGTGATTCTCAGGTGTTAGTCTCCCTCGTCCAGCATAATGTGGATGATATGCACCCCTTAAAAACCATTACTGATTGTTGCCAAACCCTCCAAAGACAATTGCATAGCTGCGATCTTAAGCATGTCTACCGCGAAGTTAATCAGGTTGCTGACATTCTCTCCAAATTTGGTTTGGATGCAGAGATTGGAGTTCATTTCATGGAGCAACCCCCTCCACAAGTTAATTCTAGCTTGCTTGATGACCTGTGTGGCAGTCCTAGAATTAGGACTATAAATTCTGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

356

Amino Acids

40.94

Weight (kDa)

9.13

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 15 - 89 7e-15 zinc-binding in reverse transcriptase
RVT_3 PF13456 198 - 317 7.9e-26 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 395, 739, 909
AccII CGCG 1 cut(s) 915
AciI CCGC 4 cut(s) 636, 696, 713, 913
AclWI GGATC 1 cut(s) 706
AcoI YGGCCR 2 cut(s) 3, 747
AcsI RAATTY 2 cut(s) 947, 1057
AcuI CTGAAG 1 cut(s) 692
AfiI CCNNNNNNNGG 1 cut(s) 712
AflII CTTAAG 2 cut(s) 643, 899
AgsI TTSAA 2 cut(s) 158, 374
AjnI CCWGG 2 cut(s) 67, 466
AluBI AGCT 5 cut(s) 310, 719, 891, 1014, 1066
AluI AGCT 5 cut(s) 310, 719, 891, 1014, 1066
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 2 cut(s) 212, 808
AlwI GGATC 1 cut(s) 706
AoxI GGCC 2 cut(s) 3, 747
ApeKI GCWGC 4 cut(s) 179, 251, 307, 891
ApoI RAATTY 2 cut(s) 947, 1057
AseI ATTAAT 1 cut(s) 615
Asp700I GAANNNNTTC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 139
BalI TGGCCA 2 cut(s) 5, 749
Bbv12I GWGCWC 1 cut(s) 383
BbvI GCAGC 4 cut(s) 166, 238, 319, 878
BccI CCATC 3 cut(s) 593, 758, 774
BciT130I CCWGG 2 cut(s) 69, 468
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 212, 808
BfaI CTAG 6 cut(s) 297, 492, 534, 606, 1011, 1041
BfrI CTTAAG 2 cut(s) 643, 899
BisI GCNGC 4 cut(s) 180, 252, 308, 892
BlsI GCNGC 4 cut(s) 181, 253, 309, 893
Bme1390I CCNGG 3 cut(s) 69, 256, 468
BmrFI CCNGG 3 cut(s) 69, 256, 468
BmsI GCATC 2 cut(s) 683, 949
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 697
BsaJI CCNNGG 2 cut(s) 67, 467
BsaXI ACNNNNNCTCC 2 cut(s) 926, 956
Bsc4I CCNNNNNNNGG 1 cut(s) 712
Bse8I GATNNNNATC 1 cut(s) 697
BseBI CCWGG 2 cut(s) 69, 468
BseDI CCNNGG 2 cut(s) 67, 467
BseGI GGATG 4 cut(s) 264, 698, 832, 964
BseJI GATNNNNATC 1 cut(s) 697
BseLI CCNNNNNNNGG 1 cut(s) 712
BseMII CTCAG 3 cut(s) 207, 806, 1053
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 4 cut(s) 166, 238, 319, 878
Bsh1236I CGCG 1 cut(s) 915
BshFI GGCC 2 cut(s) 5, 749
BsiHKAI GWGCWC 1 cut(s) 383
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 712
BsmAI GTCTC 2 cut(s) 212, 808
BsnI GGCC 2 cut(s) 5, 749
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 3 cut(s) 208, 698, 895
BspACI CCGC 4 cut(s) 636, 696, 713, 913
BspANI GGCC 2 cut(s) 5, 749
BspCNI CTCAG 3 cut(s) 208, 805, 1054
BspFNI CGCG 1 cut(s) 915
BspPI GGATC 1 cut(s) 706
BspTI CTTAAG 2 cut(s) 643, 899
BssECI CCNNGG 2 cut(s) 67, 467
BssMI GATC 3 cut(s) 208, 698, 895
BssNAI GTATAC 1 cut(s) 396
Bst1107I GTATAC 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 69, 468
Bst4CI ACNGT 2 cut(s) 15, 272
BstAFI CTTAAG 2 cut(s) 643, 899
BstC8I GCNNGC 3 cut(s) 404, 634, 1016
BstDEI CTNAG 5 cut(s) 216, 236, 283, 792, 1062
BstF5I GGATG 4 cut(s) 264, 698, 832, 964
BstFNI CGCG 1 cut(s) 915
BstKTI GATC 3 cut(s) 211, 701, 898
BstMAI GTCTC 2 cut(s) 212, 808
BstMBI GATC 3 cut(s) 208, 698, 895
BstNI CCWGG 2 cut(s) 69, 468
BstNSI RCATGY 2 cut(s) 235, 908
BstSCI CCNGG 3 cut(s) 67, 254, 466
BstUI CGCG 1 cut(s) 915
BstV1I GCAGC 4 cut(s) 166, 238, 319, 878
BstX2I RGATCY 1 cut(s) 698
BstYI RGATCY 1 cut(s) 698
BstZ17I GTATAC 1 cut(s) 396
BsuRI GGCC 2 cut(s) 5, 749
BtsCI GGATG 4 cut(s) 264, 698, 832, 964
BtsIMutI CAGTG 2 cut(s) 11, 277
Cac8I GCNNGC 3 cut(s) 404, 634, 1016
CviAII CATG 7 cut(s) 81, 134, 206, 232, 761, 905, 982
CviJI RGCY 9 cut(s) 5, 25, 310, 523, 719, 749, 891, 1014, 1066
CviKI_1 RGCY 9 cut(s) 5, 25, 310, 523, 719, 749, 891, 1014, 1066
DdeI CTNAG 5 cut(s) 216, 236, 283, 792, 1062
DpnI GATC 3 cut(s) 210, 700, 897
DpnII GATC 3 cut(s) 208, 698, 895
DraI TTTAAA 1 cut(s) 586
EaeI YGGCCR 2 cut(s) 3, 747
EciI GGCGGA 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 692
EcoRII CCWGG 2 cut(s) 67, 466
EcoT22I ATGCAT 1 cut(s) 579
FaeI CATG 7 cut(s) 84, 137, 209, 235, 764, 908, 985
FatI CATG 7 cut(s) 80, 133, 205, 231, 760, 904, 981
FauNDI CATATG 2 cut(s) 278, 410
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 3 cut(s) 395, 739, 909
Fnu4HI GCNGC 4 cut(s) 180, 252, 308, 892
FokI GGATG 4 cut(s) 271, 705, 839, 971
Fsp4HI GCNGC 4 cut(s) 180, 252, 308, 892
FspBI CTAG 6 cut(s) 297, 492, 534, 606, 1011, 1041
GluI GCNGC 4 cut(s) 180, 252, 308, 892
HaeIII GGCC 2 cut(s) 5, 749
HapII CCGG 1 cut(s) 256
Hin1II CATG 7 cut(s) 84, 137, 209, 235, 764, 908, 985
HindIII AAGCTT 1 cut(s) 717
HinfI GANTC 5 cut(s) 287, 367, 485, 650, 788
HpaII CCGG 1 cut(s) 256
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 4 cut(s) 140, 396, 740, 910
Hpy188I TCNGA 1 cut(s) 1063
Hpy8I GTNNAC 4 cut(s) 140, 396, 740, 910
HpyAV CCTTC 1 cut(s) 716
HpyCH4III ACNGT 2 cut(s) 15, 272
HpyCH4V TGCA 6 cut(s) 307, 348, 577, 835, 886, 962
HpyF3I CTNAG 5 cut(s) 216, 236, 283, 792, 1062
Hsp92II CATG 7 cut(s) 84, 137, 209, 235, 764, 908, 985
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 208, 698, 895
LmnI GCTCC 1 cut(s) 985
Lsp1109I GCAGC 4 cut(s) 166, 238, 319, 878
LweI GCATC 2 cut(s) 683, 949
MaeI CTAG 6 cut(s) 297, 492, 534, 606, 1011, 1041
MaeIII GTNAC 1 cut(s) 726
MalI GATC 3 cut(s) 210, 700, 897
MboI GATC 3 cut(s) 208, 698, 895
MboII GAAGA 6 cut(s) 58, 109, 183, 362, 574, 764
MfeI CAATTG 1 cut(s) 881
MflI RGATCY 1 cut(s) 698
MhlI GDGCHC 1 cut(s) 383
MlsI TGGCCA 2 cut(s) 5, 749
MluNI TGGCCA 2 cut(s) 5, 749
MnlI CCTC 7 cut(s) 108, 155, 414, 534, 818, 881, 1005
Mox20I TGGCCA 2 cut(s) 5, 749
Mph1103I ATGCAT 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 113
MscI TGGCCA 2 cut(s) 5, 749
Msp20I TGGCCA 2 cut(s) 5, 749
MspCI CTTAAG 2 cut(s) 643, 899
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 3 cut(s) 69, 256, 468
MunI CAATTG 1 cut(s) 881
MvaI CCWGG 2 cut(s) 69, 468
MvnI CGCG 1 cut(s) 915
NciI CCSGG 1 cut(s) 256
NdeI CATATG 2 cut(s) 278, 410
NdeII GATC 3 cut(s) 208, 698, 895
NlaIII CATG 7 cut(s) 84, 137, 209, 235, 764, 908, 985
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 2 cut(s) 235, 908
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 5 cut(s) 287, 367, 485, 650, 788
PkrI GCNGC 4 cut(s) 181, 253, 309, 893
PshBI ATTAAT 1 cut(s) 615
Psp6I CCWGG 2 cut(s) 67, 466
PspGI CCWGG 2 cut(s) 67, 466
PsrI GAACNNNNNNTAC 2 cut(s) 311, 343
PsuI RGATCY 1 cut(s) 698
SatI GCNGC 4 cut(s) 180, 252, 308, 892
Sau3AI GATC 3 cut(s) 208, 698, 895
ScrFI CCNGG 3 cut(s) 69, 256, 468
SduI GDGCHC 1 cut(s) 383
SfaNI GCATC 2 cut(s) 683, 949
SmlI CTYRAG 3 cut(s) 518, 643, 899
SmoI CTYRAG 3 cut(s) 518, 643, 899
SsiI CCGC 4 cut(s) 636, 696, 713, 913
SspI AATATT 1 cut(s) 113
SspMI CTAG 6 cut(s) 297, 492, 534, 606, 1011, 1041
StyD4I CCNGG 3 cut(s) 67, 254, 466
TaaI ACNGT 2 cut(s) 15, 272
TfiI GAWTC 5 cut(s) 287, 367, 485, 650, 788
TscAI CASTG 2 cut(s) 18, 277
TseI GCWGC 4 cut(s) 179, 251, 307, 891
TspDTI ATGAA 3 cut(s) 69, 965, 970
TspRI CASTG 2 cut(s) 18, 277
Vha464I CTTAAG 2 cut(s) 643, 899
VspI ATTAAT 1 cut(s) 615
XapI RAATTY 2 cut(s) 947, 1057
XceI RCATGY 2 cut(s) 235, 908
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XmiI GTMKAC 3 cut(s) 395, 739, 909
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 6 cut(s) 297, 492, 534, 606, 1011, 1041
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.