pycom420g00490

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
OG0000890
Physical Location & Seq
Forward (+)
565719 .. 580396
14678 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom420g00490.1

Sequence Viewer

Length: 312 bp
ATGAGGGGATGCAGGGATGTAATCCTTGAATGTGATTCTTGGGATGCTGTTATTTTGATCCAAAAACCTATTTTGGATTCGCACCCGCTCTACAACCTCATTATTGACTGCAAAGAAGCCATCGGAAAAAATTGGAGATGTGAAGTCACTCATATCTATAGAGAAATGAATGCCTCAGCTGATCACATGGCTGACTTGGGTCATGGGCTATCTCTTGGCCTTCATGTTTTTGTTTCTCCTCCTACCACTGCTAGTAATTGTCTAGTTTCTGACTCTATTGGCAAGGCCCTCCCTAGGGCTGTTCTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

104

Amino Acids

11.31

Weight (kDa)

5.87

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 65 7.1e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 88
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 52
AfiI CCNNNNNNNGG 2 cut(s) 294, 295
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
AlwI GGATC 1 cut(s) 52
AoxI GGCC 2 cut(s) 217, 285
AspA2I CCTAGG 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 286
AvrII CCTAGG 1 cut(s) 293
BbvCI CCTCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 128
BclI TGATCA 1 cut(s) 181
BfaI CTAG 3 cut(s) 252, 263, 294
BfmI CTRYAG 1 cut(s) 157
BlnI CCTAGG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 286
BmsI GCATC 1 cut(s) 34
BoxI GACNNNNGTC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 293
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 295
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 3 cut(s) 14, 22, 49
BseLI CCNNNNNNNGG 2 cut(s) 294, 295
BseMII CTCAG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 228
BshFI GGCC 2 cut(s) 219, 287
BslI CCNNNNNNNGG 2 cut(s) 294, 295
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 2 cut(s) 219, 287
Bsp143I GATC 2 cut(s) 57, 181
BspACI CCGC 1 cut(s) 86
BspANI GGCC 2 cut(s) 219, 287
BspCNI CTCAG 1 cut(s) 188
BspPI GGATC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 2 cut(s) 57, 181
BssT1I CCWWGG 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 175
BstF5I GGATG 3 cut(s) 14, 22, 49
BstKTI GATC 2 cut(s) 60, 184
BstMBI GATC 2 cut(s) 57, 181
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstPAI GACNNNNGTC 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 157
BsuRI GGCC 2 cut(s) 219, 287
BtsCI GGATG 3 cut(s) 14, 22, 49
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 286
CviAII CATG 3 cut(s) 187, 203, 224
CviJI RGCY 7 cut(s) 119, 179, 191, 208, 219, 287, 299
CviKI_1 RGCY 7 cut(s) 119, 179, 191, 208, 219, 287, 299
DdeI CTNAG 1 cut(s) 175
DpnI GATC 2 cut(s) 59, 183
DpnII GATC 2 cut(s) 57, 181
Eco130I CCWWGG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 3 cut(s) 190, 206, 227
FaiI YATR 5 cut(s) 153, 159, 188, 204, 225
FatI CATG 3 cut(s) 186, 202, 223
FauI CCCGC 1 cut(s) 93
FbaI TGATCA 1 cut(s) 181
FokI GGATG 3 cut(s) 21, 29, 56
FspBI CTAG 3 cut(s) 252, 263, 294
HaeIII GGCC 2 cut(s) 219, 287
Hin1II CATG 3 cut(s) 190, 206, 227
HinfI GANTC 3 cut(s) 35, 77, 272
Hpy188I TCNGA 2 cut(s) 125, 271
HpyAV CCTTC 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 12, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 175
Hsp92II CATG 3 cut(s) 190, 206, 227
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 57, 181
LweI GCATC 1 cut(s) 34
MaeI CTAG 3 cut(s) 252, 263, 294
MaeIII GTNAC 1 cut(s) 145
MalI GATC 2 cut(s) 59, 183
MbiI CCGCTC 1 cut(s) 88
MboI GATC 2 cut(s) 57, 181
MluCI AATT 2 cut(s) 130, 256
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 4 cut(s) 107, 184, 249, 299
MspA1I CMGCKG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 2 cut(s) 57, 181
NlaIII CATG 3 cut(s) 190, 206, 227
NmuCI GTSAC 1 cut(s) 145
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 35, 77
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PshAI GACNNNNGTC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 179
Sau3AI GATC 2 cut(s) 57, 181
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 266
SetI ASST 3 cut(s) 70, 99, 181
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 157
Sse9I AATT 2 cut(s) 130, 256
SsiI CCGC 1 cut(s) 86
SspMI CTAG 3 cut(s) 252, 263, 294
StyI CCWWGG 1 cut(s) 293
TasI AATT 2 cut(s) 130, 256
TfiI GAWTC 2 cut(s) 35, 77
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 182, 212
TspRI CASTG 1 cut(s) 253
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 3 cut(s) 252, 263, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.