Rmu_sc0003623.1_g000032

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003623.1
OG0000890
Physical Location & Seq
Reverse (-)
80813 .. 82936
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003623.1_g000032.1.cds

Sequence Viewer

Length: 795 bp
atgatccatatgcttagagactgtcagtttgctcgtgttgtttggaatgatattgtttgtcttgatacggttgctagaagcatgcagctagattggagtagttggtgtgctgctaatttacattatcataggcggtgttatggggatttgaagtggagtactgtgtttgtcttcacctgttggtacttatggaaatggagaaataaggtagtgtttgagaatgactttcatatgcctttgaatccttgtaaggtaatcattgatgtggctaaggaatggtgtgctgcaaattctggtaattcaggtgattctcctaaaaaaacaattactcttaagtggaatgctcctcctgtgcactgctttaaacttaatgttgatggagcaaggaatcaaatgggtaaaattggggcaggtggtgtaattaggagtcatgatggctcttgggttgctggattttatgccaacttgggaagtggctctgttctccaatctgaggcatggggtctgcattttgatatcaatggtcttcatcaagtcagcggcggcaaagtcccaatacctaacggtgccgtcaagagcgaggccgtccagcagaagctgagggctttgttaccgggaaccactatgatggcggtgaccaacgccgtgtggccctccaacgacaaaggacaagcaccatgggctgaactagcggcccaagctagaaaggactcgccactcgccgcgcgggaaaccaaatggggattcccacgagagcccaaaatggagcccatgacccgcgatggtgaacagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

264

Amino Acids

29.56

Weight (kDa)

9.01

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 401
AccB1I GGYRCC 1 cut(s) 566
AccII CGCG 3 cut(s) 725, 727, 780
AciI CCGC 8 cut(s) 133, 540, 543, 632, 692, 723, 727, 778
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 2 cut(s) 160, 185
AfiI CCNNNNNNNGG 1 cut(s) 493
AflII CTTAAG 1 cut(s) 332
AgsI TTSAA 2 cut(s) 151, 241
AjuI GAANNNNNNNTTGG 2 cut(s) 728, 760
AluBI AGCT 3 cut(s) 88, 598, 701
AluI AGCT 3 cut(s) 88, 598, 701
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 12
Alw44I GTGCAC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 598
AoxI GGCC 3 cut(s) 582, 650, 693
ApaLI GTGCAC 1 cut(s) 353
ApeKI GCWGC 3 cut(s) 85, 110, 284
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 2 cut(s) 651, 694
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 3 cut(s) 166, 317, 646
BaeGI GKGCMC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 566
BanII GRGCYC 2 cut(s) 759, 771
BauI CACGAG 2 cut(s) 33, 750
BbsI GAAGAC 2 cut(s) 163, 518
Bbv12I GWGCWC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 599
BbvI GCAGC 3 cut(s) 97, 97, 271
BccI CCATC 4 cut(s) 371, 428, 622, 776
BceAI ACGGC 3 cut(s) 554, 569, 629
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 4 cut(s) 75, 89, 689, 702
BfrI CTTAAG 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 401
BisI GCNGC 7 cut(s) 86, 111, 285, 541, 544, 693, 723
BlsI GCNGC 7 cut(s) 87, 112, 286, 542, 545, 694, 724
BmcAI AGTACT 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 651, 694
BmiI GGNNCC 3 cut(s) 568, 619, 768
BmrFI CCNGG 1 cut(s) 615
BpiI GAAGAC 2 cut(s) 163, 518
Bpu10I CCTNAGC 2 cut(s) 270, 599
BpuMI CCSGG 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 677
Bsc4I CCNNNNNNNGG 1 cut(s) 493
BseDI CCNNGG 1 cut(s) 677
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMII CTCAG 2 cut(s) 483, 590
BseRI GAGGAG 1 cut(s) 336
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 3 cut(s) 97, 97, 271
Bsh1236I CGCG 3 cut(s) 725, 727, 780
BshFI GGCC 3 cut(s) 584, 652, 695
BshNI GGYRCC 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 1 cut(s) 614
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 1 cut(s) 493
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 3 cut(s) 584, 652, 695
Bsp1286I GDGCHC 3 cut(s) 357, 759, 771
Bsp143I GATC 1 cut(s) 3
Bsp19I CCATGG 1 cut(s) 677
BspACI CCGC 8 cut(s) 133, 540, 543, 632, 692, 723, 727, 778
BspANI GGCC 3 cut(s) 584, 652, 695
BspCNI CTCAG 2 cut(s) 484, 591
BspFNI CGCG 3 cut(s) 725, 727, 780
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 3 cut(s) 568, 619, 768
BspMI ACCTGC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 566
BspTI CTTAAG 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 677
BssMI GATC 1 cut(s) 3
BssSI CACGAG 2 cut(s) 33, 750
BssT1I CCWWGG 1 cut(s) 677
Bst2BI CACGAG 2 cut(s) 33, 750
Bst4CI ACNGT 5 cut(s) 23, 70, 163, 566, 792
BstAFI CTTAAG 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 4 cut(s) 14, 270, 492, 599
BstDSI CCRYGG 1 cut(s) 677
BstEII GGTNACC 1 cut(s) 634
BstFNI CGCG 3 cut(s) 725, 727, 780
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 680, 689, 698
BstNSI RCATGY 1 cut(s) 85
BstPI GGTNACC 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 613
BstSLI GKGCMC 1 cut(s) 357
BstUI CGCG 3 cut(s) 725, 727, 780
BstV1I GCAGC 3 cut(s) 97, 97, 271
BstV2I GAAGAC 2 cut(s) 163, 518
BstXI CCANNNNNNTGG 1 cut(s) 628
BsuRI GGCC 3 cut(s) 584, 652, 695
BtgI CCRYGG 1 cut(s) 677
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 1 cut(s) 83
CaiI CAGNNNCTG 1 cut(s) 598
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 727
Cfr13I GGNCC 2 cut(s) 651, 694
Csp6I GTAC 2 cut(s) 159, 184
CviAII CATG 5 cut(s) 82, 431, 498, 678, 772
CviQI GTAC 2 cut(s) 159, 184
DdeI CTNAG 4 cut(s) 14, 270, 492, 599
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraI TTTAAA 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 677
Eco24I GRGCYC 2 cut(s) 759, 771
Eco32I GATATC 1 cut(s) 517
Eco91I GGTNACC 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 634
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 677
EcoT38I GRGCYC 2 cut(s) 759, 771
ErhI CCWWGG 1 cut(s) 677
FaeI CATG 5 cut(s) 85, 434, 501, 681, 775
FaqI GGGAC 1 cut(s) 536
FatI CATG 5 cut(s) 81, 430, 497, 677, 771
FauI CCCGC 2 cut(s) 720, 785
FauNDI CATATG 2 cut(s) 9, 231
Fnu4HI GCNGC 7 cut(s) 86, 111, 285, 541, 544, 693, 723
FriOI GRGCYC 2 cut(s) 759, 771
Fsp4HI GCNGC 7 cut(s) 86, 111, 285, 541, 544, 693, 723
FspBI CTAG 4 cut(s) 75, 89, 689, 702
GlaI GCGC 1 cut(s) 726
GluI GCNGC 7 cut(s) 86, 111, 285, 541, 544, 693, 723
HaeIII GGCC 3 cut(s) 584, 652, 695
HapII CCGG 1 cut(s) 614
HhaI GCGC 1 cut(s) 727
Hin1II CATG 5 cut(s) 85, 434, 501, 681, 775
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HinfI GANTC 6 cut(s) 241, 308, 388, 427, 710, 744
HpaII CCGG 1 cut(s) 614
HphI GGTGA 3 cut(s) 166, 317, 646
Hpy166II GTNNAC 2 cut(s) 355, 788
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 3 cut(s) 62, 431, 574
Hpy8I GTNNAC 2 cut(s) 355, 788
HpyCH4III ACNGT 5 cut(s) 23, 70, 163, 566, 792
HpyCH4V TGCA 4 cut(s) 85, 287, 355, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 680, 689, 698
HpyF3I CTNAG 4 cut(s) 14, 270, 492, 599
Hsp92II CATG 5 cut(s) 85, 434, 501, 681, 775
HspAI GCGC 1 cut(s) 725
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 3 cut(s) 349, 380, 766
LpnPI CCDG 8 cut(s) 190, 279, 288, 363, 396, 435, 602, 627
Lsp1109I GCAGC 3 cut(s) 97, 97, 271
MaeI CTAG 4 cut(s) 75, 89, 689, 702
MaeIII GTNAC 2 cut(s) 609, 634
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 163, 518
MhlI GDGCHC 3 cut(s) 357, 759, 771
MluCI AATT 6 cut(s) 115, 289, 298, 324, 402, 420
MlyI GAGTC 2 cut(s) 436, 704
MmeI TCCRAC 1 cut(s) 681
MnlI CCTC 5 cut(s) 357, 487, 574, 594, 664
MseI TTAA 3 cut(s) 333, 363, 369
MslI CAYNNNNRTG 2 cut(s) 263, 626
MspA1I CMGCKG 1 cut(s) 540
MspCI CTTAAG 1 cut(s) 332
MspI CCGG 1 cut(s) 614
MspR9I CCNGG 1 cut(s) 615
Mva1269I GAATGC 1 cut(s) 346
MvnI CGCG 3 cut(s) 725, 727, 780
MwoI GCNNNNNNNGC 3 cut(s) 680, 689, 698
NciI CCSGG 1 cut(s) 615
NcoI CCATGG 1 cut(s) 677
NdeI CATATG 2 cut(s) 9, 231
NdeII GATC 1 cut(s) 3
NlaIII CATG 5 cut(s) 85, 434, 501, 681, 775
NlaIV GGNNCC 3 cut(s) 568, 619, 768
NmuCI GTSAC 1 cut(s) 634
NspI RCATGY 1 cut(s) 85
PaeI GCATGC 1 cut(s) 85
PagI TCATGA 1 cut(s) 430
PaqCI CACCTGC 1 cut(s) 401
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 4 cut(s) 241, 308, 388, 744
PkrI GCNGC 7 cut(s) 87, 112, 286, 542, 545, 694, 724
PleI GAGTC 2 cut(s) 435, 704
PpsI GAGTC 2 cut(s) 435, 704
PspEI GGTNACC 1 cut(s) 634
PspN4I GGNNCC 3 cut(s) 568, 619, 768
PspPI GGNCC 2 cut(s) 651, 694
PstNI CAGNNNCTG 1 cut(s) 598
RsaI GTAC 2 cut(s) 160, 185
RsaNI GTAC 2 cut(s) 159, 184
RseI CAYNNNNRTG 2 cut(s) 263, 626
SaqAI TTAA 3 cut(s) 333, 363, 369
SatI GCNGC 7 cut(s) 86, 111, 285, 541, 544, 693, 723
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 2 cut(s) 651, 694
ScaI AGTACT 1 cut(s) 160
SchI GAGTC 2 cut(s) 436, 704
ScrFI CCNGG 1 cut(s) 615
SduI GDGCHC 3 cut(s) 357, 759, 771
SetI ASST 9 cut(s) 90, 179, 210, 255, 307, 415, 562, 600, 703
SmiMI CAYNNNNRTG 2 cut(s) 263, 626
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SphI GCATGC 1 cut(s) 85
Sse9I AATT 6 cut(s) 115, 289, 298, 324, 402, 420
SsiI CCGC 8 cut(s) 133, 540, 543, 632, 692, 723, 727, 778
SspMI CTAG 4 cut(s) 75, 89, 689, 702
StyD4I CCNGG 1 cut(s) 613
StyI CCWWGG 1 cut(s) 677
TaaI ACNGT 5 cut(s) 23, 70, 163, 566, 792
TasI AATT 6 cut(s) 115, 289, 298, 324, 402, 420
TatI WGTACW 1 cut(s) 158
TauI GCSGC 4 cut(s) 543, 546, 695, 725
TfiI GAWTC 4 cut(s) 241, 308, 388, 744
Tru1I TTAA 3 cut(s) 333, 363, 369
Tru9I TTAA 3 cut(s) 333, 363, 369
TscAI CASTG 1 cut(s) 362
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 3 cut(s) 85, 110, 284
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 2 cut(s) 218, 518
TspRI CASTG 1 cut(s) 362
Vha464I CTTAAG 1 cut(s) 332
VneI GTGCAC 1 cut(s) 353
XapI RAATTY 1 cut(s) 289
XceI RCATGY 1 cut(s) 85
XspI CTAG 4 cut(s) 75, 89, 689, 702
ZrmI AGTACT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.