Rmu_ssc0000454.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000454.1
OG0000890
Physical Location & Seq
Forward (+)
9316 .. 9663
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000454.1_g000003.1.cds

Sequence Viewer

Length: 348 bp
atgctactgggtttacaaatggctgctaatcttatgatggacaaagtagtcgtagaatgtgattctgaagtgttggttagtttgatgaataatggagttgatgatcttcatcctttaaagacagttatcaacttttgtctacacctacaaagtagcttctccgagtgtgtgataaggcacgtgtttcgagaagttaatacggttgtggatgtcctttcaagatgcaatctatctgctgagattggtgctatctattttgagcaacctccttcacaggttactaaccttgtgttagatgacttgtgtgaagtccttagatataggaaagttgcaactgccattggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

115

Amino Acids

12.81

Weight (kDa)

4.81

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 87
AcvI CACGTG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 219
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 23
BbrPI CACGTG 1 cut(s) 181
BbvI GCAGC 1 cut(s) 10
BccI CCATC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 17
BsaAI YACGTR 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 108
BseGI GGATG 2 cut(s) 109, 214
BseJI GATNNNNATC 1 cut(s) 108
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 229
BsrI ACTGG 1 cut(s) 12
BssMI GATC 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 124, 202
BstBAI YACGTR 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 237, 314
BstF5I GGATG 2 cut(s) 109, 214
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 10
BtsCI GGATG 2 cut(s) 109, 214
CviJI RGCY 3 cut(s) 23, 156, 345
CviKI_1 RGCY 3 cut(s) 23, 156, 345
DdeI CTNAG 2 cut(s) 237, 314
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
DraI TTTAAA 1 cut(s) 117
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 87
Eco72I CACGTG 1 cut(s) 181
FaiI YATR 2 cut(s) 35, 321
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 2 cut(s) 96, 221
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 14, 140
Hpy188I TCNGA 2 cut(s) 67, 163
Hpy188III TCNNGA 2 cut(s) 188, 219
Hpy8I GTNNAC 2 cut(s) 14, 140
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 2 cut(s) 124, 202
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 225, 332
HpyF3I CTNAG 2 cut(s) 237, 314
HpySE526I ACGT 1 cut(s) 180
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 1 cut(s) 260
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 212
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 98
MnlI CCTC 1 cut(s) 276
MseI TTAA 2 cut(s) 116, 195
NdeII GATC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 25
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 181
PspCI CACGTG 1 cut(s) 181
SaqAI TTAA 2 cut(s) 116, 195
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 103
SetI ASST 6 cut(s) 147, 158, 183, 268, 279, 288
SfaNI GCATC 1 cut(s) 212
SgeI CNNG 9 cut(s) 20, 175, 191, 193, 200, 231, 287, 299, 313
TaaI ACNGT 2 cut(s) 124, 202
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 187
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 116, 195
Tru9I TTAA 2 cut(s) 116, 195
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 98, 101
XmiI GTMKAC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.