FvH4_1g24182

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000890
Physical Location & Seq
Forward (+)
16059351 .. 16061180
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24182.t1

Sequence Viewer

Length: 1485 bp
ATGGCTAGAAAAATTAGTAGGATTTGTGGGTATGCTCTTACTAATAATTTGGGTAAATATCTTGGTATGCCTCTTATTCATTCCCCTGTGACTAAGCAAACTTATAGACCTATTGTGGAGAAAGTTCAAAGTAAGTTAACTGGTTGGAAAAGTAAGACTCTAAATTTTGCTGGTAGACTCACTTTGGTCCAAGCTGTTACTTCAACTATTCCTATATATGTTATGCAAGCAGCTAAGCTTCCAGTTGCAACCTGTGATTCTTTAGATAAGCTTTCAAGGGATTTTCTTTGGGGTGATTGTGATGAGAAGAAGAAATTCCATCTTATTAATTGGGATATGATTTGTAAACCTAAAGCTAATGGTGGTTTGGGATTGAAGAAAGCTATTCATATGAACCAAGCTATGTTGGCCAAAATCAGCTGGAGAATACTTCAAAATGACAAAGGCCTGTGGTGTGATGTTTTGTTTAAAAAGATTGGGGATGGTAGTTGCATTAATTTTTGGAATGATAATTGGTTGGGATCTGGTCCTCTTTGTTTGAAAGTGACAGGCTCGATTATTAGAGATCCATGCCTAACTGTGAACCAATGTTGGAATGGTGATGGTGATGATAAGCTTATTCGGGGAGCTACTTCTAATGGAAAATTCTATGTGAAATCTGCTTATTTATGTACCATGAAGATGGAAAATCTTGTTCCTTTCCCTTGGCAGTATATTTGGAAGCTTCCCATTCCTCCCAAATTGAAAACTTTCTTTTGGCTTGTTTGCCATGGGAAACTTTTATCTAACGAGGAGAGGTCTAAAAGACATCTTACAACTGACTCTAGTTGTCCTTGTTGTCCTAATTATCCTGAGACTCTCCTTCATTTGCTCAGGGATTGCAAAATGGCTAGAGAACTTGGTCTTTGGACTGGAATGGCTGGTTGCATGCTAATACTCACAGAGTTCAGGTACCCTTTTGATCCTACTGCTATCATTCTAAATAGTGTGATTGAATGGAAAAATGCTAATGCTTCTCATTCTCGAAATGTTGAAAAAGTCCCTATCAGTTTAAGATGGTCTAAACCTCCTATGGCATGGATGAAACTGAATGTTGATGGTGCTAGAAGTCAAAATGGTTGTATTAGAGCTGGTGGTGTTTTGAGGGATCACAATGGCAATTGGGTTTCTAGTTTCACTACTAGTCTAAGCAAAGGTTATGTTATTGAAGCTGAGAGTTGGGGTCTTTTGCTGGGGTTGAAGCTTGCTGGTTCACTCCATTGTAAGTCTCTGCTTATTGAGTCTGATTCGGAGGTTCTTGTGAACATGATGAACAAGGGTGTGCAGAAGCTGCATCCCCTATATAGTATTCTTAACATATGCAAGTTTTTGAAGAACAATCTCTCTATTTGTGAAATTTCACATTGTTATAGAGAGATTAATATGGTAGCTGATATTCTCTCCAAGTCCAGCCTTGGCTCTGAATTTGGGGTGCAATACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

495

Amino Acids

55.67

Weight (kDa)

9.29

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 216 - 300 2.3e-18 zinc-binding in reverse transcriptase
RVT_3 PF13456 364 - 483 1e-21 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 951
AccB1I GGYRCC 1 cut(s) 951
AccI GTMKAC 1 cut(s) 175
AclWI GGATC 4 cut(s) 529, 560, 956, 1155
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 5 cut(s) 163, 314, 644, 1395, 1463
AfaI GTAC 2 cut(s) 673, 953
AhlI ACTAGT 1 cut(s) 1181
Alw26I GTCTC 2 cut(s) 848, 1272
AlwI GGATC 4 cut(s) 529, 560, 956, 1155
AlwNI CAGNNNCTG 1 cut(s) 1330
AoxI GGCC 2 cut(s) 408, 445
ApeKI GCWGC 2 cut(s) 230, 1330
ApoI RAATTY 5 cut(s) 163, 314, 644, 1395, 1463
AseI ATTAAT 3 cut(s) 327, 495, 1419
Asp700I GAANNNNTTC 2 cut(s) 314, 749
Asp718I GGTACC 1 cut(s) 951
AspS9I GGNCC 2 cut(s) 187, 527
AsuHPI GGTGA 3 cut(s) 305, 611, 617
AvaII GGWCC 2 cut(s) 187, 527
BalI TGGCCA 1 cut(s) 410
BanI GGYRCC 1 cut(s) 951
BbvI GCAGC 2 cut(s) 242, 1317
BccI CCATC 6 cut(s) 327, 476, 596, 676, 1050, 1091
BcoDI GTCTC 2 cut(s) 848, 1272
BcuI ACTAGT 1 cut(s) 1181
BfaI CTAG 7 cut(s) 6, 825, 891, 1104, 1170, 1182, 1483
BisI GCNGC 2 cut(s) 231, 1331
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 2 cut(s) 232, 1332
Bme18I GGWCC 2 cut(s) 187, 527
BmgT120I GGNCC 2 cut(s) 187, 527
BmiI GGNNCC 1 cut(s) 953
BmsI GCATC 1 cut(s) 1342
BpmI CTGGAG 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 872
Bpu1102I GCTNAGC 1 cut(s) 234
BsaJI CCNNGG 3 cut(s) 704, 769, 1453
Bse1I ACTGG 3 cut(s) 145, 242, 916
BseDI CCNNGG 3 cut(s) 704, 769, 1453
BseGI GGATG 3 cut(s) 487, 1086, 1333
BseMII CTCAG 3 cut(s) 843, 886, 1203
BseNI ACTGG 3 cut(s) 145, 242, 916
BseRI GAGGAG 1 cut(s) 806
BseXI GCAGC 2 cut(s) 242, 1317
BseYI CCCAGC 1 cut(s) 1231
BsgI GTGCAG 1 cut(s) 1343
BshFI GGCC 2 cut(s) 410, 447
BshNI GGYRCC 1 cut(s) 951
BslFI GGGAC 1 cut(s) 1025
BsmAI GTCTC 2 cut(s) 848, 1272
BsmFI GGGAC 1 cut(s) 1025
BsnI GGCC 2 cut(s) 410, 447
Bsp143I GATC 4 cut(s) 521, 565, 961, 1147
Bsp1720I GCTNAGC 1 cut(s) 234
Bsp19I CCATGG 1 cut(s) 769
BspANI GGCC 2 cut(s) 410, 447
BspCNI CTCAG 3 cut(s) 844, 885, 1204
BspLI GGNNCC 1 cut(s) 953
BspPI GGATC 4 cut(s) 529, 560, 956, 1155
BspT107I GGYRCC 1 cut(s) 951
BsrI ACTGG 3 cut(s) 145, 242, 916
BssECI CCNNGG 3 cut(s) 704, 769, 1453
BssMI GATC 4 cut(s) 521, 565, 961, 1147
BssT1I CCWWGG 3 cut(s) 704, 769, 1453
Bst4CI ACNGT 1 cut(s) 580
BstAPI GCANNNNNTGC 1 cut(s) 1330
BstC8I GCNNGC 3 cut(s) 228, 929, 1245
BstDEI CTNAG 6 cut(s) 93, 234, 852, 872, 1187, 1212
BstDSI CCRYGG 1 cut(s) 769
BstF5I GGATG 3 cut(s) 487, 1086, 1333
BstKTI GATC 4 cut(s) 524, 568, 964, 1150
BstMAI GTCTC 2 cut(s) 848, 1272
BstMBI GATC 4 cut(s) 521, 565, 961, 1147
BstMWI GCNNNNNNNGC 2 cut(s) 407, 1330
BstNSI RCATGY 1 cut(s) 931
BstV1I GCAGC 2 cut(s) 242, 1317
BstX2I RGATCY 2 cut(s) 521, 565
BstXI CCANNNNNNTGG 1 cut(s) 682
BstYI RGATCY 2 cut(s) 521, 565
BsuRI GGCC 2 cut(s) 410, 447
BtgI CCRYGG 1 cut(s) 769
BtsCI GGATG 3 cut(s) 487, 1086, 1333
Cac8I GCNNGC 3 cut(s) 228, 929, 1245
CaiI CAGNNNCTG 1 cut(s) 1330
Cfr13I GGNCC 2 cut(s) 187, 527
Csp6I GTAC 2 cut(s) 672, 952
CviAII CATG 6 cut(s) 570, 676, 770, 928, 1077, 1306
CviQI GTAC 2 cut(s) 672, 952
DdeI CTNAG 6 cut(s) 93, 234, 852, 872, 1187, 1212
DpnI GATC 4 cut(s) 523, 567, 963, 1149
DpnII GATC 4 cut(s) 521, 565, 961, 1147
DraI TTTAAA 1 cut(s) 469
EaeI YGGCCR 1 cut(s) 408
Eco130I CCWWGG 3 cut(s) 704, 769, 1453
Eco147I AGGCCT 1 cut(s) 447
Eco47I GGWCC 2 cut(s) 187, 527
EcoT14I CCWWGG 3 cut(s) 704, 769, 1453
ErhI CCWWGG 3 cut(s) 704, 769, 1453
FaeI CATG 6 cut(s) 573, 679, 773, 931, 1080, 1309
FaqI GGGAC 1 cut(s) 1025
FatI CATG 6 cut(s) 569, 675, 769, 927, 1076, 1305
FauNDI CATATG 2 cut(s) 390, 1358
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 231, 1331
FokI GGATG 3 cut(s) 494, 1093, 1320
Fsp4HI GCNGC 2 cut(s) 231, 1331
FspBI CTAG 7 cut(s) 6, 825, 891, 1104, 1170, 1182, 1483
GluI GCNGC 2 cut(s) 231, 1331
GsaI CCCAGC 1 cut(s) 1235
GsuI CTGGAG 1 cut(s) 442
HaeIII GGCC 2 cut(s) 410, 447
Hin1II CATG 6 cut(s) 573, 679, 773, 931, 1080, 1309
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 5 cut(s) 236, 269, 614, 722, 1241
HinfI GANTC 7 cut(s) 157, 177, 257, 821, 856, 1280, 1286
HpaI GTTAAC 1 cut(s) 138
HphI GGTGA 3 cut(s) 305, 611, 617
Hpy166II GTNNAC 6 cut(s) 138, 176, 347, 583, 1253, 1303
Hpy188I TCNGA 3 cut(s) 1285, 1291, 1462
Hpy188III TCNNGA 2 cut(s) 851, 1023
Hpy8I GTNNAC 6 cut(s) 138, 176, 347, 583, 1253, 1303
HpyAV CCTTC 1 cut(s) 872
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4V TGCA 9 cut(s) 226, 248, 492, 882, 927, 1324, 1333, 1362, 1474
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 1330
HpyF3I CTNAG 6 cut(s) 93, 234, 852, 872, 1187, 1212
Hsp92II CATG 6 cut(s) 573, 679, 773, 931, 1080, 1309
KpnI GGTACC 1 cut(s) 955
KspAI GTTAAC 1 cut(s) 138
Kzo9I GATC 4 cut(s) 521, 565, 961, 1147
LmnI GCTCC 1 cut(s) 626
Lsp1109I GCAGC 2 cut(s) 242, 1317
LweI GCATC 1 cut(s) 1342
MaeI CTAG 7 cut(s) 6, 825, 891, 1104, 1170, 1182, 1483
MaeIII GTNAC 3 cut(s) 88, 196, 544
MalI GATC 4 cut(s) 523, 567, 963, 1149
MboI GATC 4 cut(s) 521, 565, 961, 1147
MboII GAAGA 5 cut(s) 319, 322, 388, 691, 1384
MfeI CAATTG 1 cut(s) 1159
MflI RGATCY 2 cut(s) 521, 565
MlsI TGGCCA 1 cut(s) 410
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 5 cut(s) 151, 171, 815, 850, 1289
MmeI TCCRAC 2 cut(s) 125, 572
MnlI CCTC 8 cut(s) 81, 540, 744, 784, 789, 1077, 1137, 1285
Mox20I TGGCCA 1 cut(s) 410
MroXI GAANNNNTTC 2 cut(s) 314, 749
MscI TGGCCA 1 cut(s) 410
MseI TTAA 7 cut(s) 137, 327, 468, 495, 1052, 1353, 1419
MslI CAYNNNNRTG 1 cut(s) 680
Msp20I TGGCCA 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 420
MunI CAATTG 1 cut(s) 1159
MwoI GCNNNNNNNGC 2 cut(s) 407, 1330
NcoI CCATGG 1 cut(s) 769
NdeI CATATG 2 cut(s) 390, 1358
NdeII GATC 4 cut(s) 521, 565, 961, 1147
NlaIII CATG 6 cut(s) 573, 679, 773, 931, 1080, 1309
NlaIV GGNNCC 1 cut(s) 953
NmuCI GTSAC 2 cut(s) 88, 544
NspI RCATGY 1 cut(s) 931
PaeI GCATGC 1 cut(s) 931
PceI AGGCCT 1 cut(s) 447
PdmI GAANNNNTTC 2 cut(s) 314, 749
PfeI GAWTC 2 cut(s) 257, 1286
PkrI GCNGC 2 cut(s) 232, 1332
PleI GAGTC 5 cut(s) 151, 171, 815, 850, 1288
PpsI GAGTC 5 cut(s) 151, 171, 815, 850, 1288
PshBI ATTAAT 3 cut(s) 327, 495, 1419
PspFI CCCAGC 1 cut(s) 1231
PspN4I GGNNCC 1 cut(s) 953
PspPI GGNCC 2 cut(s) 187, 527
PstNI CAGNNNCTG 1 cut(s) 1330
PsuI RGATCY 2 cut(s) 521, 565
PvuII CAGCTG 1 cut(s) 420
RsaI GTAC 2 cut(s) 673, 953
RsaNI GTAC 2 cut(s) 672, 952
RseI CAYNNNNRTG 1 cut(s) 680
SaqAI TTAA 7 cut(s) 137, 327, 468, 495, 1052, 1353, 1419
SatI GCNGC 2 cut(s) 231, 1331
Sau3AI GATC 4 cut(s) 521, 565, 961, 1147
Sau96I GGNCC 2 cut(s) 187, 527
SchI GAGTC 5 cut(s) 151, 171, 815, 850, 1289
SfaNI GCATC 1 cut(s) 1342
SinI GGWCC 2 cut(s) 187, 527
SmiMI CAYNNNNRTG 1 cut(s) 680
SpeI ACTAGT 1 cut(s) 1181
SphI GCATGC 1 cut(s) 931
SseBI AGGCCT 1 cut(s) 447
SspMI CTAG 7 cut(s) 6, 825, 891, 1104, 1170, 1182, 1483
StuI AGGCCT 1 cut(s) 447
StyI CCWWGG 3 cut(s) 704, 769, 1453
TaaI ACNGT 1 cut(s) 580
TaqI TCGA 2 cut(s) 554, 1024
TfiI GAWTC 2 cut(s) 257, 1286
Tru1I TTAA 7 cut(s) 137, 327, 468, 495, 1052, 1353, 1419
Tru9I TTAA 7 cut(s) 137, 327, 468, 495, 1052, 1353, 1419
TseFI GTSAC 2 cut(s) 88, 544
TseI GCWGC 2 cut(s) 230, 1330
Tsp45I GTSAC 2 cut(s) 88, 544
TspDTI ATGAA 7 cut(s) 68, 377, 407, 692, 854, 1097, 1325
VpaK11BI GGWCC 2 cut(s) 187, 527
VspI ATTAAT 3 cut(s) 327, 495, 1419
XapI RAATTY 5 cut(s) 163, 314, 644, 1395, 1463
XceI RCATGY 1 cut(s) 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 175
XmnI GAANNNNTTC 2 cut(s) 314, 749
XspI CTAG 7 cut(s) 6, 825, 891, 1104, 1170, 1182, 1483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.