pycom15g37390

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000890
Physical Location & Seq
Reverse (-)
37347293 .. 37347848
556 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g37390.1

Sequence Viewer

Length: 504 bp
ATGGTCGAATATGGGCCTGAACTGGCTGAAATTTTCCCAAGAACAGTAACGGCGCATGCCAACAGGGAACTGTGGAACCACCATCAACTGCACCGGCCTCCGGCAGCCCACCTGCCTCAGTTGCGGAGTTTACAGTTGGGGAGGAGGGGTTTCAGTACTATGATGTTAACGTGGCAATTGCAGCACTGCTGGAGGTTTAAAATCAATACAGATGGGAGTTGGATCCGGCCACCAATTGGTAGACAAATCATCTCAATCCATTGGATCCGCCCGCCAATTGGTAGATATAAAATCAATACAGATGGGAGTTGTAAAGACCCATTTAGTCACATAAGCGCTAGAGGTTTGATTCGTAATTCTGAAGGGGATTGGATTAAGGGATTTGCTGCTCATTTGGGCAGAGGAACCATCTTGGAAGCTGAGATTTGGGGTGTTTTCATGAGCCTTTCTATAGCCTGGGATGAGGGTTGCAGGGATGTGATTCTTGGGATGCTGTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3

Protein Analysis

168

Amino Acids

19.23

Weight (kDa)

9.56

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 99 - 162 8.5e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 120
Acc36I ACCTGC 1 cut(s) 120
AccB7I CCANNNNNTGG 1 cut(s) 236
AccI GTMKAC 1 cut(s) 241
AciI CCGC 3 cut(s) 124, 268, 272
AclWI GGATC 4 cut(s) 217, 230, 259, 272
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 157
AfeI AGCGCT 1 cut(s) 337
AfiI CCNNNNNNNGG 3 cut(s) 100, 236, 278
AjnI CCWGG 1 cut(s) 455
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
AlwI GGATC 4 cut(s) 217, 230, 259, 272
Aor51HI AGCGCT 1 cut(s) 337
AoxI GGCC 3 cut(s) 14, 95, 227
ApeKI GCWGC 3 cut(s) 104, 181, 386
ApoI RAATTY 1 cut(s) 30
AspLEI GCGC 2 cut(s) 55, 338
AspS9I GGNCC 1 cut(s) 14
BamHI GGATCC 2 cut(s) 222, 264
BbvI GCAGC 3 cut(s) 116, 193, 373
BccI CCATC 4 cut(s) 90, 206, 296, 416
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 457
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 120
BisI GCNGC 3 cut(s) 105, 182, 387
BlsI GCNGC 3 cut(s) 106, 183, 388
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 4 cut(s) 77, 224, 266, 406
BmrFI CCNGG 1 cut(s) 457
BmsI GCATC 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 236, 278
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 457
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 3 cut(s) 466, 481, 495
BseLI CCNNNNNNNGG 3 cut(s) 100, 236, 278
BseMII CTCAG 2 cut(s) 131, 411
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 157
BseXI GCAGC 3 cut(s) 116, 193, 373
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 3 cut(s) 16, 97, 229
BsiSI CCGG 3 cut(s) 94, 101, 226
BslI CCNNNNNNNGG 3 cut(s) 100, 236, 278
BsnI GGCC 3 cut(s) 16, 97, 229
Bsp143I GATC 2 cut(s) 222, 264
BspACI CCGC 3 cut(s) 124, 268, 272
BspANI GGCC 3 cut(s) 16, 97, 229
BspCNI CTCAG 2 cut(s) 130, 412
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 4 cut(s) 77, 224, 266, 406
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 4 cut(s) 217, 230, 259, 272
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 2 cut(s) 222, 264
Bst2UI CCWGG 1 cut(s) 457
Bst4CI ACNGT 3 cut(s) 46, 72, 135
BstC8I GCNNGC 2 cut(s) 57, 272
BstDEI CTNAG 2 cut(s) 117, 420
BstF5I GGATG 3 cut(s) 466, 481, 495
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 2 cut(s) 55, 338
BstKTI GATC 2 cut(s) 225, 267
BstMBI GATC 2 cut(s) 222, 264
BstMWI GCNNNNNNNGC 2 cut(s) 121, 181
BstNI CCWGG 1 cut(s) 457
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 455
BstSFI CTRYAG 1 cut(s) 450
BstV1I GCAGC 3 cut(s) 116, 193, 373
BstX2I RGATCY 2 cut(s) 222, 264
BstYI RGATCY 2 cut(s) 222, 264
BsuRI GGCC 3 cut(s) 16, 97, 229
BtsCI GGATG 3 cut(s) 466, 481, 495
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 184
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 57, 272
CciI TCATGA 1 cut(s) 438
CfoI GCGC 2 cut(s) 55, 338
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 156
CviAII CATG 2 cut(s) 56, 439
CviJI RGCY 8 cut(s) 16, 26, 97, 107, 229, 419, 444, 455
CviKI_1 RGCY 8 cut(s) 16, 26, 97, 107, 229, 419, 444, 455
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 2 cut(s) 117, 420
DpnI GATC 2 cut(s) 224, 266
DpnII GATC 2 cut(s) 222, 264
DraI TTTAAA 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 227
EciI GGCGGA 1 cut(s) 257
Eco47III AGCGCT 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 455
FaeI CATG 2 cut(s) 59, 442
FaiI YATR 7 cut(s) 12, 57, 161, 288, 332, 440, 452
FatI CATG 2 cut(s) 55, 438
FauI CCCGC 1 cut(s) 279
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 105, 182, 387
FokI GGATG 2 cut(s) 473, 488
Fsp4HI GCNGC 3 cut(s) 105, 182, 387
FspBI CTAG 1 cut(s) 339
GlaI GCGC 2 cut(s) 54, 337
GluI GCNGC 3 cut(s) 105, 182, 387
GsuI CTGGAG 1 cut(s) 211
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 3 cut(s) 16, 97, 229
HapII CCGG 3 cut(s) 94, 101, 226
HhaI GCGC 2 cut(s) 55, 338
Hin1II CATG 2 cut(s) 59, 442
Hin6I GCGC 2 cut(s) 53, 336
HinP1I GCGC 2 cut(s) 53, 336
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 2 cut(s) 349, 481
HpaI GTTAAC 1 cut(s) 168
HpaII CCGG 3 cut(s) 94, 101, 226
Hpy166II GTNNAC 3 cut(s) 131, 168, 242
Hpy188I TCNGA 1 cut(s) 361
Hpy188III TCNNGA 1 cut(s) 439
Hpy8I GTNNAC 3 cut(s) 131, 168, 242
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 3 cut(s) 46, 72, 135
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 3 cut(s) 91, 181, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 181
HpyF3I CTNAG 2 cut(s) 117, 420
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 2 cut(s) 59, 442
HspAI GCGC 2 cut(s) 53, 336
KspAI GTTAAC 1 cut(s) 168
Kzo9I GATC 2 cut(s) 222, 264
Lsp1109I GCAGC 3 cut(s) 116, 193, 373
LweI GCATC 1 cut(s) 480
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 46, 326
MalI GATC 2 cut(s) 224, 266
MboI GATC 2 cut(s) 222, 264
MfeI CAATTG 3 cut(s) 176, 234, 276
MflI RGATCY 2 cut(s) 222, 264
MluCI AATT 5 cut(s) 30, 176, 234, 276, 355
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 8 cut(s) 108, 126, 135, 138, 186, 335, 395, 457
MseI TTAA 3 cut(s) 167, 198, 375
MspI CCGG 3 cut(s) 94, 101, 226
MspR9I CCNGG 1 cut(s) 457
MunI CAATTG 3 cut(s) 176, 234, 276
MvaI CCWGG 1 cut(s) 457
MwoI GCNNNNNNNGC 2 cut(s) 121, 181
NdeII GATC 2 cut(s) 222, 264
NlaIII CATG 2 cut(s) 59, 442
NlaIV GGNNCC 4 cut(s) 77, 224, 266, 406
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 59
PaeI GCATGC 1 cut(s) 59
PagI TCATGA 1 cut(s) 438
PaqCI CACCTGC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 349, 481
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 3 cut(s) 106, 183, 388
Psp6I CCWGG 1 cut(s) 455
PspGI CCWGG 1 cut(s) 455
PspN4I GGNNCC 4 cut(s) 77, 224, 266, 406
PspPI GGNCC 1 cut(s) 14
PsuI RGATCY 2 cut(s) 222, 264
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SaqAI TTAA 3 cut(s) 167, 198, 375
SatI GCNGC 3 cut(s) 105, 182, 387
Sau3AI GATC 2 cut(s) 222, 264
Sau96I GGNCC 1 cut(s) 14
ScaI AGTACT 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 457
SetI ASST 5 cut(s) 114, 173, 197, 346, 421
SfaNI GCATC 1 cut(s) 480
SfcI CTRYAG 1 cut(s) 450
SphI GCATGC 1 cut(s) 59
Sse9I AATT 5 cut(s) 30, 176, 234, 276, 355
SsiI CCGC 3 cut(s) 124, 268, 272
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 455
TaaI ACNGT 3 cut(s) 46, 72, 135
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 6
TasI AATT 5 cut(s) 30, 176, 234, 276, 355
TatI WGTACW 1 cut(s) 155
TfiI GAWTC 2 cut(s) 349, 481
Tru1I TTAA 3 cut(s) 167, 198, 375
Tru9I TTAA 3 cut(s) 167, 198, 375
TscAI CASTG 1 cut(s) 191
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 3 cut(s) 104, 181, 386
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 427
TspRI CASTG 1 cut(s) 191
Van91I CCANNNNNTGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 30
XceI RCATGY 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 241
XspI CTAG 1 cut(s) 339
ZrmI AGTACT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.