Rmu_sc0005837.1_g000007

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005837.1
OG0000890
Physical Location & Seq
Forward (+)
27135 .. 27913
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005837.1_g000007.1.cds

Sequence Viewer

Length: 627 bp
atgatccatatgcttagagactgtcaatttgcttgtgtcgtttggaatgatattgtttgtcttgatacggttgctagaggcatgcagctagattggagtagttggtgtgctgctgatttacattatcataggcggtgttatggggatttgaagtggagtattgtgtttgtcttcacttgttggtacttatggaaatggagaaataaggtagtgtttgagaatgactttcatatgcctttgaatccttgtaaggtaatcattgatgtggctaaggaatggtgtgcagcaaattctggtaattcaggtgattctcttaaaaaaacaattactctcaagtggaatgttcctcctgtgcactgctttaaacttaatgttgatggagcaaggaatcaaatgggtaaaattggggcaggtggtgtaattaggagtcatgatggctcttgggttgctggatattatgcaaacctgggaagtggctctgttctccaatctgaggcatgggcaaaagttctgagctttgatattagacacacttatagagaagtgaatgcagttgcagatatcctatccaaggatgggttgcaggctgaagctggggtgcatgtcatgttgcatcctcctccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

208

Amino Acids

23.53

Weight (kDa)

8.07

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 401
AciI CCGC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 493, 571, 576
AgsI TTSAA 2 cut(s) 151, 241
AjnI CCWGG 1 cut(s) 465
AluBI AGCT 3 cut(s) 88, 516, 593
AluI AGCT 3 cut(s) 88, 516, 593
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 12
Alw44I GTGCAC 1 cut(s) 353
ApaLI GTGCAC 1 cut(s) 353
ApeKI GCWGC 3 cut(s) 85, 110, 284
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AsuHPI GGTGA 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 97, 97, 296
BccI CCATC 3 cut(s) 371, 428, 569
BciT130I CCWGG 1 cut(s) 467
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 75, 89
BfuAI ACCTGC 1 cut(s) 401
BisI GCNGC 3 cut(s) 86, 111, 285
BlsI GCNGC 3 cut(s) 87, 112, 286
Bme1390I CCNGG 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 467
BmsI GCATC 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 466, 570
Bsc4I CCNNNNNNNGG 3 cut(s) 493, 571, 576
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 2 cut(s) 466, 570
BseGI GGATG 2 cut(s) 580, 613
BseLI CCNNNNNNNGG 3 cut(s) 493, 571, 576
BseMII CTCAG 2 cut(s) 483, 503
BseRI GAGGAG 1 cut(s) 609
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 3 cut(s) 97, 97, 296
BseYI CCCAGC 1 cut(s) 593
BsgI GTGCAG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 357
BslI CCNNNNNNNGG 3 cut(s) 493, 571, 576
BsmAI GTCTC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 553
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 133
BspCNI CTCAG 2 cut(s) 484, 504
BspHI TCATGA 1 cut(s) 430
BspMI ACCTGC 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 466, 570
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 2 cut(s) 23, 70
BstC8I GCNNGC 2 cut(s) 83, 585
BstDEI CTNAG 4 cut(s) 14, 270, 492, 512
BstENI CCTNNNNNAGG 1 cut(s) 569
BstF5I GGATG 2 cut(s) 580, 613
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 3
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 2 cut(s) 85, 605
BstSCI CCNGG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 3 cut(s) 97, 97, 296
BstV2I GAAGAC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 580, 613
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 83, 585
CciI TCATGA 1 cut(s) 430
Csp6I GTAC 1 cut(s) 184
CviAII CATG 5 cut(s) 82, 431, 498, 602, 607
CviJI RGCY 7 cut(s) 88, 269, 438, 477, 516, 587, 593
CviKI_1 RGCY 7 cut(s) 88, 269, 438, 477, 516, 587, 593
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 4 cut(s) 14, 270, 492, 512
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraI TTTAAA 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 570
Eco32I GATATC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 609
EcoNI CCTNNNNNAGG 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 465
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 5 cut(s) 85, 434, 501, 605, 610
FatI CATG 5 cut(s) 81, 430, 497, 601, 606
FauNDI CATATG 2 cut(s) 9, 231
Fnu4HI GCNGC 3 cut(s) 86, 111, 285
FokI GGATG 2 cut(s) 587, 600
Fsp4HI GCNGC 3 cut(s) 86, 111, 285
FspBI CTAG 2 cut(s) 75, 89
GluI GCNGC 3 cut(s) 86, 111, 285
GsaI CCCAGC 1 cut(s) 597
Hin1II CATG 5 cut(s) 85, 434, 501, 605, 610
HinfI GANTC 4 cut(s) 241, 308, 388, 427
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 493, 513
Hpy188III TCNNGA 2 cut(s) 62, 431
Hpy8I GTNNAC 1 cut(s) 355
HpyCH4III ACNGT 2 cut(s) 23, 70
HpyCH4V TGCA 9 cut(s) 85, 284, 355, 461, 551, 557, 583, 601, 613
HpyF3I CTNAG 4 cut(s) 14, 270, 492, 512
Hsp92II CATG 5 cut(s) 85, 434, 501, 605, 610
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 9 cut(s) 279, 288, 363, 396, 435, 452, 479, 569, 579
Lsp1109I GCAGC 3 cut(s) 97, 97, 296
LweI GCATC 1 cut(s) 622
MaeI CTAG 2 cut(s) 75, 89
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 6 cut(s) 26, 289, 298, 324, 402, 420
MlyI GAGTC 1 cut(s) 436
MnlI CCTC 4 cut(s) 71, 357, 487, 627
MseI TTAA 3 cut(s) 315, 363, 369
MslI CAYNNNNRTG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 1 cut(s) 467
NdeI CATATG 2 cut(s) 9, 231
NdeII GATC 1 cut(s) 3
NlaIII CATG 5 cut(s) 85, 434, 501, 605, 610
NspI RCATGY 2 cut(s) 85, 605
PaeI GCATGC 1 cut(s) 85
PagI TCATGA 1 cut(s) 430
PaqCI CACCTGC 1 cut(s) 401
PctI GAATGC 1 cut(s) 553
PfeI GAWTC 3 cut(s) 241, 308, 388
PkrI GCNGC 3 cut(s) 87, 112, 286
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 465
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 1 cut(s) 465
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 3 cut(s) 315, 363, 369
SatI GCNGC 3 cut(s) 86, 111, 285
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 1 cut(s) 357
SetI ASST 8 cut(s) 90, 210, 255, 307, 415, 468, 518, 595
SfaNI GCATC 1 cut(s) 622
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SphI GCATGC 1 cut(s) 85
Sse9I AATT 6 cut(s) 26, 289, 298, 324, 402, 420
SsiI CCGC 1 cut(s) 133
SspMI CTAG 2 cut(s) 75, 89
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 2 cut(s) 23, 70
TasI AATT 6 cut(s) 26, 289, 298, 324, 402, 420
TfiI GAWTC 3 cut(s) 241, 308, 388
Tru1I TTAA 3 cut(s) 315, 363, 369
Tru9I TTAA 3 cut(s) 315, 363, 369
TscAI CASTG 1 cut(s) 362
TseI GCWGC 3 cut(s) 85, 110, 284
TspDTI ATGAA 1 cut(s) 218
TspRI CASTG 1 cut(s) 362
VneI GTGCAC 1 cut(s) 353
XagI CCTNNNNNAGG 1 cut(s) 569
XapI RAATTY 1 cut(s) 289
XceI RCATGY 2 cut(s) 85, 605
XspI CTAG 2 cut(s) 75, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.