RchiOBHm_Chr6g0262791

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000890
Physical Location & Seq
Forward (+)
17604612 .. 17609236
4625 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23567

Sequence Viewer

Length: 990 bp
ATGTGTCTGCCTCCAAAATTAAAAATATTTTTGTGGCTGATTATTCAAGGTAAACTCCTCACTAATACTGAAAGGATGAAGAGAAGGCTCACAAGTGATAATTCTTGTCCTATATGTCATACTCATTCTGAATCCTTATTGCACTTGCTAAGAGATTGCCCTAGAGTAAACAAAATTTGGCAGGAGATCAACTGTTTTGACAATATTAGAAGAGCTATGCAAATTGATTGGGCAAAATGGCTAGCTGCTAATGGTTATTGCACAATGAAGTGTTACGGCGGAATGAATTGGAATGTCCTATTTACCTTCACTTGTTGGTATATTTGGAAATGGAGGAATAAAAATATTTTTGAAGAAGGATTTCAATTCCCTATTAACCCAGTTAAGGTCATTATGGATAGTGTTACCGAATGGTATCTTGCTCAGGGAAAGAAGAATACAAGGACCGACCAGACTACTGTGGCTTTGAAGTGGCTTAAACCTGGTAATGGATGGGTCAAATTGAATGTCGATGGTGCTAGAGCTAATTTAAATGGAAAAATAGGAGCTGGAAGGGTTCTTAGAGATCAGGATGGTAACTGGATACATGGATTTACTGCTCATATTGGGCAAGGTCAGGTTTTGGAAGCCGAGACATGGGGCATGTTACTGGGTTTACAAATGGCTGCTAATCTTGGGATGGACAAAGTGGTCGTAGAATGTGATTCTGAAGTGTTGGTTAGTCTAATGAATAATGGAGTTGATGATTTGCATCCTTTAAAGACAGTTATCAACTTTTGTCTACACCTACAAAGTAGCTTCTCCGAGTGTGTGATAAGTCACGTGTTTCAAGAAGTTAATACGGTTGCGGATGGCCTTTCAAGATGCAATCTATCTGCTGAGATTGGTGCTATCTACTTTGAGCAACCTCCTCCACAAGTTACTAACATTGTGTTAGATGACTTGTGTGAAGTCCTTAAATATAGGAAAGTTGCAACAGCCATTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

329

Amino Acids

37.42

Weight (kDa)

8.18

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 3 - 60 5.1e-13 zinc-binding in reverse transcriptase
RVT_3 PF13456 169 - 287 1.3e-25 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 689
AccI GTMKAC 1 cut(s) 781
AciI CCGC 2 cut(s) 279, 848
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 1 cut(s) 729
AcvI CACGTG 1 cut(s) 823
AfiI CCNNNNNNNGG 3 cut(s) 385, 488, 636
AflIII ACRYGT 1 cut(s) 822
AgsI TTSAA 7 cut(s) 47, 353, 365, 469, 505, 830, 861
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 5 cut(s) 215, 245, 524, 548, 798
AluI AGCT 5 cut(s) 215, 245, 524, 548, 798
Alw26I GTCTC 1 cut(s) 626
AoxI GGCC 1 cut(s) 853
ApeKI GCWGC 2 cut(s) 245, 665
ApoI RAATTY 1 cut(s) 174
ArsI GACNNNNNNTTYG 2 cut(s) 492, 524
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 444
AsuNHI GCTAGC 1 cut(s) 241
AvaII GGWCC 1 cut(s) 444
BbrPI CACGTG 1 cut(s) 823
BbvI GCAGC 2 cut(s) 232, 652
BccI CCATC 5 cut(s) 486, 506, 566, 673, 845
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 483
BciVI GTATCC 1 cut(s) 576
BcoDI GTCTC 1 cut(s) 626
BfaI CTAG 3 cut(s) 162, 242, 519
BfuI GTATCC 1 cut(s) 576
BisI GCNGC 2 cut(s) 246, 666
BlsI GCNGC 2 cut(s) 247, 667
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 2 cut(s) 374, 659
BmsI GCATC 2 cut(s) 760, 854
BmtI GCTAGC 1 cut(s) 245
BmuI ACTGGG 2 cut(s) 374, 659
Bpu10I CCTNAGC 1 cut(s) 423
BsaAI YACGTR 1 cut(s) 823
BsaBI GATNNNNATC 1 cut(s) 750
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 488, 636
Bse1I ACTGG 3 cut(s) 380, 584, 654
Bse8I GATNNNNATC 1 cut(s) 750
BseBI CCWGG 1 cut(s) 483
BseGI GGATG 6 cut(s) 81, 497, 577, 684, 751, 856
BseJI GATNNNNATC 1 cut(s) 750
BseLI CCNNNNNNNGG 3 cut(s) 385, 488, 636
BseMII CTCAG 2 cut(s) 437, 870
BseNI ACTGG 3 cut(s) 380, 584, 654
BseRI GAGGAG 2 cut(s) 47, 900
BseXI GCAGC 2 cut(s) 232, 652
BshFI GGCC 1 cut(s) 855
BslI CCNNNNNNNGG 3 cut(s) 385, 488, 636
BsmAI GTCTC 1 cut(s) 626
BsnI GGCC 1 cut(s) 855
Bsp143I GATC 2 cut(s) 186, 565
BspACI CCGC 2 cut(s) 279, 848
BspANI GGCC 1 cut(s) 855
BspCNI CTCAG 2 cut(s) 436, 871
BspOI GCTAGC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 205
BsrI ACTGG 3 cut(s) 380, 584, 654
BssMI GATC 2 cut(s) 186, 565
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 4 cut(s) 194, 460, 766, 844
Bst6I CTCTTC 2 cut(s) 74, 205
BstBAI YACGTR 1 cut(s) 823
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 4 cut(s) 149, 423, 560, 879
BstF5I GGATG 6 cut(s) 81, 497, 577, 684, 751, 856
BstKTI GATC 2 cut(s) 189, 568
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 2 cut(s) 186, 565
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 646
BstSCI CCNGG 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 232, 652
BsuI GTATCC 1 cut(s) 576
BsuRI GGCC 1 cut(s) 855
BtsCI GGATG 6 cut(s) 81, 497, 577, 684, 751, 856
Cac8I GCNNGC 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 444
CsiI ACCWGGT 1 cut(s) 481
CviAII CATG 3 cut(s) 587, 636, 643
DdeI CTNAG 4 cut(s) 149, 423, 560, 879
DpnI GATC 2 cut(s) 188, 567
DpnII GATC 2 cut(s) 186, 565
DraI TTTAAA 2 cut(s) 531, 759
DrdI GACNNNNNNGTC 1 cut(s) 689
DseDI GACNNNNNNGTC 1 cut(s) 689
Eam1104I CTCTTC 2 cut(s) 74, 205
EarI CTCTTC 2 cut(s) 74, 205
EciI GGCGGA 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 729
Eco72I CACGTG 1 cut(s) 823
EcoRII CCWGG 1 cut(s) 481
FaeI CATG 3 cut(s) 590, 639, 646
FatI CATG 3 cut(s) 586, 635, 642
FblI GTMKAC 1 cut(s) 781
Fnu4HI GCNGC 2 cut(s) 246, 666
FokI GGATG 6 cut(s) 88, 504, 584, 691, 738, 863
Fsp4HI GCNGC 2 cut(s) 246, 666
FspBI CTAG 3 cut(s) 162, 242, 519
GluI GCNGC 2 cut(s) 246, 666
HaeIII GGCC 1 cut(s) 855
Hin1II CATG 3 cut(s) 590, 639, 646
HinfI GANTC 2 cut(s) 131, 704
Hpy166II GTNNAC 4 cut(s) 53, 169, 656, 782
Hpy188I TCNGA 3 cut(s) 130, 709, 805
Hpy188III TCNNGA 3 cut(s) 569, 830, 861
Hpy8I GTNNAC 4 cut(s) 53, 169, 656, 782
HpyAV CCTTC 4 cut(s) 78, 316, 350, 546
HpyCH4III ACNGT 4 cut(s) 194, 460, 766, 844
HpyCH4IV ACGT 1 cut(s) 822
HpyCH4V TGCA 6 cut(s) 142, 220, 261, 751, 867, 974
HpyF3I CTNAG 4 cut(s) 149, 423, 560, 879
HpySE526I ACGT 1 cut(s) 822
Hsp92II CATG 3 cut(s) 590, 639, 646
Kzo9I GATC 2 cut(s) 186, 565
LguI GCTCTTC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 545
Lsp1109I GCAGC 2 cut(s) 232, 652
LweI GCATC 2 cut(s) 760, 854
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 3 cut(s) 162, 242, 519
MaeII ACGT 1 cut(s) 822
MaeIII GTNAC 6 cut(s) 272, 403, 575, 645, 818, 919
MalI GATC 2 cut(s) 188, 567
MboI GATC 2 cut(s) 186, 565
MboII GAAGA 4 cut(s) 91, 222, 365, 445
MluCI AATT 8 cut(s) 17, 100, 174, 222, 286, 365, 500, 526
MnlI CCTC 5 cut(s) 21, 68, 327, 918, 921
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 8 cut(s) 20, 375, 384, 477, 530, 758, 837, 957
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
NdeII GATC 2 cut(s) 186, 565
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 3 cut(s) 590, 639, 646
NmeAIII GCCGAG 1 cut(s) 655
NmuCI GTSAC 1 cut(s) 818
NspI RCATGY 1 cut(s) 646
PciSI GCTCTTC 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 131, 704
PkrI GCNGC 2 cut(s) 247, 667
PmaCI CACGTG 1 cut(s) 823
PmlI CACGTG 1 cut(s) 823
Ppu21I YACGTR 1 cut(s) 823
Psp6I CCWGG 1 cut(s) 481
PspCI CACGTG 1 cut(s) 823
PspGI CCWGG 1 cut(s) 481
PspPI GGNCC 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 205
SaqAI TTAA 8 cut(s) 20, 375, 384, 477, 530, 758, 837, 957
SatI GCNGC 2 cut(s) 246, 666
Sau3AI GATC 2 cut(s) 186, 565
Sau96I GGNCC 1 cut(s) 444
ScrFI CCNGG 1 cut(s) 483
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 2 cut(s) 760, 854
SinI GGWCC 1 cut(s) 444
SmiI ATTTAAAT 1 cut(s) 531
Sse9I AATT 8 cut(s) 17, 100, 174, 222, 286, 365, 500, 526
SsiI CCGC 2 cut(s) 279, 848
SspI AATATT 3 cut(s) 27, 205, 346
SspMI CTAG 3 cut(s) 162, 242, 519
StyD4I CCNGG 1 cut(s) 481
SwaI ATTTAAAT 1 cut(s) 531
TaaI ACNGT 4 cut(s) 194, 460, 766, 844
TaiI ACGT 1 cut(s) 825
TaqI TCGA 1 cut(s) 510
TaqII GACCGA 1 cut(s) 461
TasI AATT 8 cut(s) 17, 100, 174, 222, 286, 365, 500, 526
TfiI GAWTC 2 cut(s) 131, 704
Tru1I TTAA 8 cut(s) 20, 375, 384, 477, 530, 758, 837, 957
Tru9I TTAA 8 cut(s) 20, 375, 384, 477, 530, 758, 837, 957
TseFI GTSAC 1 cut(s) 818
TseI GCWGC 2 cut(s) 245, 665
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 4 cut(s) 92, 281, 299, 743
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 1 cut(s) 174
XceI RCATGY 1 cut(s) 646
XmiI GTMKAC 1 cut(s) 781
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 3 cut(s) 162, 242, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.