Rmu_co8215414.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8215414.1
OG0000890
Physical Location & Seq
Reverse (-)
385 .. 705
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8215414.1_g000001.1.cds

Sequence Viewer

Length: 321 bp
atggcttggcagaatggttgtcgacagttgaaaatagaaatggattcgcttgttgcggtcaagttggttctctctcctattgatcatctacatcctctttatagtattgtggcaagttgtcaagagtttttgagtagggattggaatgtgtctcttacccatgtttacagagagtgtaattcagtggctgatttgttagcaagtattgggcatggctatgagccaggctgcagattctttagctcccctcctgctgatgtcgtgcctcttttggaagctgatctattgggcttgtctaagccaagattaattgtgatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

106

Amino Acids

11.78

Weight (kDa)

5.69

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 56
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 243, 278
AluI AGCT 2 cut(s) 243, 278
Alw26I GTCTC 1 cut(s) 156
AlwNI CAGNNNCTG 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 228
AseI ATTAAT 1 cut(s) 308
BbvI GCAGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 225
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 229
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 82, 280
BspACI CCGC 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 233
BssMI GATC 2 cut(s) 82, 280
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 2 cut(s) 85, 283
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 82, 280
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 188
CviAII CATG 2 cut(s) 161, 212
CviJI RGCY 9 cut(s) 5, 188, 216, 223, 228, 243, 278, 291, 301
CviKI_1 RGCY 9 cut(s) 5, 188, 216, 223, 228, 243, 278, 291, 301
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 84, 282
DpnII GATC 2 cut(s) 82, 280
EcoRII CCWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 164, 215
FaiI YATR 4 cut(s) 102, 162, 213, 219
FatI CATG 2 cut(s) 160, 211
FbaI TGATCA 1 cut(s) 82
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 229
Hin1II CATG 2 cut(s) 164, 215
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HinfI GANTC 2 cut(s) 44, 234
Hpy166II GTNNAC 2 cut(s) 23, 166
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 23, 166
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 2 cut(s) 164, 215
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 2 cut(s) 82, 280
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 3 cut(s) 210, 237, 264
Lsp1109I GCAGC 1 cut(s) 215
MalI GATC 2 cut(s) 84, 282
MboI GATC 2 cut(s) 82, 280
MluCI AATT 2 cut(s) 178, 309
MnlI CCTC 3 cut(s) 105, 258, 276
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
NdeII GATC 2 cut(s) 82, 280
NlaIII CATG 2 cut(s) 164, 215
PfeI GAWTC 2 cut(s) 44, 234
PkrI GCNGC 1 cut(s) 230
PshBI ATTAAT 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PstI CTGCAG 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 216
SalI GTCGAC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 2 cut(s) 82, 280
ScrFI CCNGG 1 cut(s) 225
SetI ASST 2 cut(s) 245, 280
SfcI CTRYAG 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 2 cut(s) 178, 309
SsiI CCGC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 178, 309
TfiI GAWTC 2 cut(s) 44, 234
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 1 cut(s) 189
TseI GCWGC 1 cut(s) 228
TspRI CASTG 1 cut(s) 189
VspI ATTAAT 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.