Rh5AG403600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000890
Physical Location & Seq
Forward (+)
69902682 .. 69903080
399 bp
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UTR
Exon/CDS
Intron
Rh5AG403600.1

Sequence Viewer

Length: 399 bp
ATGAATGGGTTTTCTGCCAAGTTGGGCAGTGGTCAAGTTGTTGAAGCTGAACTTTGGGGGCTTCTGAAAGGAATGGAAATGGCTTGGCAGAATGGTTGTCGACAGTTGAAAATAGAAATGGATTCGCTTGTTGCGGTCAAGTTGGTTCTCTCTCCTATTGATCATCTCCATCCTCTTTATAGTATTGTGGCAAGTTGTCAAGAGTTTTTGAGTAGGGATTGGAATGTGTCTCTTACCCATGTTTACAGAGAGTGTAATTCAGTGGCTGATTTGTTAGCAAATATTGGGCATGGCTATGAGCCAGGCTGCAGATTCTTTAGCTCCCCTCCTGCTGATGTCGTGCCTCTTTTGGAAGCTGATCTATTGGGCTTGTCTAAGCCAAGATTAATTGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

132

Amino Acids

14.54

Weight (kDa)

5.46

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 94 2.1e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 100
AciI CCGC 1 cut(s) 134
AgsI TTSAA 2 cut(s) 44, 109
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 3 cut(s) 47, 321, 356
AluI AGCT 3 cut(s) 47, 321, 356
Alw26I GTCTC 1 cut(s) 234
AlwNI CAGNNNCTG 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 306
AseI ATTAAT 1 cut(s) 386
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 303
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 307
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 160, 358
BspACI CCGC 1 cut(s) 134
BspMAI CTGCAG 1 cut(s) 311
BssMI GATC 2 cut(s) 160, 358
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 2 cut(s) 163, 361
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 160, 358
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 34, 267
CaiI CAGNNNCTG 1 cut(s) 266
CviAII CATG 2 cut(s) 239, 290
DdeI CTNAG 1 cut(s) 375
DpnI GATC 2 cut(s) 162, 360
DpnII GATC 2 cut(s) 160, 358
EcoRII CCWGG 1 cut(s) 301
FaeI CATG 2 cut(s) 242, 293
FaiI YATR 4 cut(s) 180, 240, 291, 297
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 2 cut(s) 238, 289
FbaI TGATCA 1 cut(s) 160
FblI GTMKAC 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 307
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 307
GluI GCNGC 1 cut(s) 307
Hin1II CATG 2 cut(s) 242, 293
HincII GTYRAC 1 cut(s) 101
HindII GTYRAC 1 cut(s) 101
HinfI GANTC 2 cut(s) 122, 312
Hpy166II GTNNAC 2 cut(s) 101, 244
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 101, 244
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 309
HpyF3I CTNAG 1 cut(s) 375
Hsp92II CATG 2 cut(s) 242, 293
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 160, 358
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 3 cut(s) 288, 315, 342
Lsp1109I GCAGC 1 cut(s) 293
MalI GATC 2 cut(s) 162, 360
MboI GATC 2 cut(s) 160, 358
MluCI AATT 2 cut(s) 256, 387
MnlI CCTC 3 cut(s) 183, 336, 354
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 303
NdeII GATC 2 cut(s) 160, 358
NlaIII CATG 2 cut(s) 242, 293
PfeI GAWTC 2 cut(s) 122, 312
PkrI GCNGC 1 cut(s) 308
PshBI ATTAAT 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PstI CTGCAG 1 cut(s) 311
PstNI CAGNNNCTG 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 294
SalI GTCGAC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 2 cut(s) 160, 358
ScrFI CCNGG 1 cut(s) 303
SetI ASST 3 cut(s) 49, 323, 358
SfcI CTRYAG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 2 cut(s) 256, 387
SsiI CCGC 1 cut(s) 134
SspI AATATT 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 100
TasI AATT 2 cut(s) 256, 387
TfiI GAWTC 2 cut(s) 122, 312
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 2 cut(s) 34, 267
TseI GCWGC 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 34, 267
VspI ATTAAT 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.