Rroxscaffold_180G00433210

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000180
OG0000890
Physical Location & Seq
Reverse (-)
55345 .. 55617
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_180G00433210.1

Sequence Viewer

Length: 273 bp
ATGGAAGTATTGGAGCTGGGGGGGGGGGGGGGGCTTATTAGAGATTGTGATGGTAATTGGATATCTGGTTTCTCTGCTTGCTTAGGGAGTGGTTCTGTTCTTGAGGCAGAAGCTTGGGGTCTCCTGCTGAGTTTAAAGCTCACCTGCTCCCTTAAGTGTGCTTCTGTTCTCATTGAATCTGATTCTGAAATTTTAGTTCGAATGCTTAATCAAGGGGTGGATGATTTTCATCCTTTGCATAGTGTGATAAGGGTGCAAGTTTCTGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

90

Amino Acids

9.52

Weight (kDa)

4.53

Isoelectric Point (pI)

29.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 6 - 80 8.4e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 189
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 3 cut(s) 16, 113, 139
AluI AGCT 3 cut(s) 16, 113, 139
Alw26I GTCTC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 199
BccI CCATC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 125
Bse8I GATNNNNATC 1 cut(s) 228
BseGI GGATG 2 cut(s) 226, 229
BseJI GATNNNNATC 1 cut(s) 228
BseMII CTCAG 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 199
BspCNI CTCAG 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 199
BspTI CTTAAG 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 82, 128
BstF5I GGATG 2 cut(s) 226, 229
BstMAI GTCTC 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 264
BtsCI GGATG 2 cut(s) 226, 229
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 79
CviJI RGCY 4 cut(s) 16, 34, 113, 139
CviKI_1 RGCY 4 cut(s) 16, 34, 113, 139
DdeI CTNAG 2 cut(s) 82, 128
DraI TTTAAA 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 63
EcoRV GATATC 1 cut(s) 63
FaiI YATR 1 cut(s) 240
FokI GGATG 2 cut(s) 216, 233
GsaI CCCAGC 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 2 cut(s) 176, 182
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 181, 187
Hpy188III TCNNGA 1 cut(s) 101
HpyCH4V TGCA 3 cut(s) 238, 256, 266
HpyF3I CTNAG 2 cut(s) 82, 128
LmnI GCTCC 2 cut(s) 13, 152
LpnPI CCDG 4 cut(s) 2, 51, 137, 157
MluCI AATT 2 cut(s) 55, 189
MnlI CCTC 1 cut(s) 97
MseI TTAA 3 cut(s) 134, 153, 207
MspCI CTTAAG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 207
NspV TTCGAA 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 152
PctI GAATGC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 176, 182
PspFI CCCAGC 1 cut(s) 16
PstI CTGCAG 1 cut(s) 268
SaqAI TTAA 3 cut(s) 134, 153, 207
SetI ASST 4 cut(s) 18, 115, 141, 146
SfcI CTRYAG 1 cut(s) 264
SfuI TTCGAA 1 cut(s) 199
SgeI CNNG 9 cut(s) 29, 78, 90, 113, 126, 136, 156, 224, 269
SmlI CTYRAG 2 cut(s) 101, 152
SmoI CTYRAG 2 cut(s) 101, 152
Sse9I AATT 2 cut(s) 55, 189
TaqI TCGA 1 cut(s) 199
TasI AATT 2 cut(s) 55, 189
TfiI GAWTC 2 cut(s) 176, 182
Tru1I TTAA 3 cut(s) 134, 153, 207
Tru9I TTAA 3 cut(s) 134, 153, 207
TspDTI ATGAA 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 152
XapI RAATTY 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.