FvH4_2g15861

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000890
Physical Location & Seq
Forward (+)
13904089 .. 13906687
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15861.t1

Sequence Viewer

Length: 585 bp
ATGGCAAGGAATGTTTCAGTTTCGATAAATGTTCTCACGTACACTGTCCCTTCTGTCACAAAAGTGGAGCTTTGTTGGCACTTTCCGCCTAAGGATTGGTTTAAACTTAATGTTGATGGCAGCTTGCATAAAAATACTGGGATTATTTGTGCTAGAGGAGTCCTTCGGAATGATAGAGGTGAATGGTTGAATGGTTTCTCTGCCAAGTTAGGCATTGGACAAGTCCTTGAAGCTGAACTTTGGGGACTGTTGAAAGGAATGGAGATGGCATGGCAGCATGGTTGCAACTCTTTGGAAGTTGAAGTAGACTCTCTTGTTGCAGTCAAATTGGTCCTTTCTGTTATTGATCACCTTCATCCTCTCTACAGTCTTATAACAAACTGCCAGGAGTCTCTTAGTAGGAATTGGAATGTGTCTCTTATCCATGATTACAGAGAAAGTAATTCAGTGGCTGACTTGCTAGCAAGCATTGGTCATGGTTATGAGCTTGGGTGCAGATTCTTTAGCTCCCCTCCTAATGATGTTATCCCTCTCTTGGAAGCTGATTATTCCGGCTTTTCCAAGCCTAGATTAGTTGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

195

Amino Acids

21.65

Weight (kDa)

5.95

Isoelectric Point (pI)

15.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 37 - 156 2.5e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccI GTMKAC 1 cut(s) 306
AciI CCGC 1 cut(s) 86
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 535
AgsI TTSAA 4 cut(s) 190, 230, 253, 302
AjnI CCWGG 1 cut(s) 384
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 6 cut(s) 70, 123, 233, 487, 507, 542
AluI AGCT 6 cut(s) 70, 123, 233, 487, 507, 542
Alw26I GTCTC 2 cut(s) 396, 420
AlwNI CAGNNNCTG 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 120, 274
Asp700I GAANNNNTTC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 191, 341
AsuNHI GCTAGC 1 cut(s) 460
AvaII GGWCC 1 cut(s) 331
AxyI CCTNAGG 1 cut(s) 90
BbvI GCAGC 2 cut(s) 132, 286
BccI CCATC 2 cut(s) 110, 259
BciT130I CCWGG 1 cut(s) 386
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 2 cut(s) 396, 420
BfaI CTAG 3 cut(s) 153, 461, 567
BfmI CTRYAG 1 cut(s) 364
BisI GCNGC 2 cut(s) 121, 275
BlsI GCNGC 2 cut(s) 122, 276
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmrFI CCNGG 1 cut(s) 386
BmrI ACTGGG 1 cut(s) 147
BmtI GCTAGC 1 cut(s) 464
BmuI ACTGGG 1 cut(s) 147
BsaAI YACGTR 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse1I ACTGG 1 cut(s) 142
Bse21I CCTNAGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 386
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 535
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 132, 286
BsgI GTGCAG 1 cut(s) 514
BsiSI CCGG 1 cut(s) 552
BslFI GGGAC 2 cut(s) 32, 258
BslI CCNNNNNNNGG 1 cut(s) 535
BsmAI GTCTC 2 cut(s) 396, 420
BsmFI GGGAC 2 cut(s) 32, 258
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 1 cut(s) 86
BspOI GCTAGC 1 cut(s) 464
BsrI ACTGG 1 cut(s) 142
BssMI GATC 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 3 cut(s) 46, 249, 368
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 125, 462, 466
BstDEI CTNAG 2 cut(s) 90, 395
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 2 cut(s) 396, 420
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 76, 85
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 132, 286
Bsu36I CCTNAGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 42, 453
Cac8I GCNNGC 3 cut(s) 125, 462, 466
CaiI CAGNNNCTG 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 40
CviAII CATG 4 cut(s) 270, 278, 425, 476
CviJI RGCY 9 cut(s) 70, 123, 233, 452, 487, 507, 542, 555, 565
CviKI_1 RGCY 9 cut(s) 70, 123, 233, 452, 487, 507, 542, 555, 565
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 90, 395
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
DraI TTTAAA 1 cut(s) 103
EciI GGCGGA 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 331
Eco81I CCTNAGG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 384
FaeI CATG 4 cut(s) 273, 281, 428, 479
FaiI YATR 7 cut(s) 129, 271, 279, 374, 426, 477, 483
FalI AAGNNNNNCTT 4 cut(s) 54, 86, 222, 254
FaqI GGGAC 2 cut(s) 32, 258
FatI CATG 4 cut(s) 269, 277, 424, 475
FbaI TGATCA 1 cut(s) 346
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 121, 275
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 121, 275
FspBI CTAG 3 cut(s) 153, 461, 567
GluI GCNGC 2 cut(s) 121, 275
HapII CCGG 1 cut(s) 552
Hin1II CATG 4 cut(s) 273, 281, 428, 479
HinfI GANTC 4 cut(s) 159, 308, 389, 498
HpaII CCGG 1 cut(s) 552
HphI GGTGA 2 cut(s) 191, 341
Hpy166II GTNNAC 2 cut(s) 42, 307
Hpy188I TCNGA 1 cut(s) 168
Hpy8I GTNNAC 2 cut(s) 42, 307
HpyAV CCTTC 3 cut(s) 60, 173, 362
HpyCH4III ACNGT 3 cut(s) 46, 249, 368
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 4 cut(s) 127, 285, 320, 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 85
HpyF3I CTNAG 2 cut(s) 90, 395
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 4 cut(s) 273, 281, 428, 479
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 2 cut(s) 67, 512
LpnPI CCDG 4 cut(s) 123, 371, 398, 565
Lsp1109I GCAGC 2 cut(s) 132, 286
MaeI CTAG 3 cut(s) 153, 461, 567
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MluCI AATT 3 cut(s) 326, 403, 442
MlyI GAGTC 3 cut(s) 168, 302, 398
MnlI CCTC 5 cut(s) 149, 170, 369, 522, 540
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 2 cut(s) 102, 108
MslI CAYNNNNRTG 2 cut(s) 62, 480
MspI CCGG 1 cut(s) 552
MspR9I CCNGG 1 cut(s) 386
MssI GTTTAAAC 1 cut(s) 103
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 76, 85
NdeII GATC 1 cut(s) 346
NheI GCTAGC 1 cut(s) 460
NlaIII CATG 4 cut(s) 273, 281, 428, 479
NmuCI GTSAC 1 cut(s) 55
OliI CACNNNNGTG 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 498
PkrI GCNGC 2 cut(s) 122, 276
PleI GAGTC 3 cut(s) 167, 302, 397
PmeI GTTTAAAC 1 cut(s) 103
PpsI GAGTC 3 cut(s) 167, 302, 397
Ppu21I YACGTR 1 cut(s) 39
PsiI TTATAA 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspPI GGNCC 1 cut(s) 331
PstNI CAGNNNCTG 1 cut(s) 452
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 2 cut(s) 62, 480
SaqAI TTAA 2 cut(s) 102, 108
SatI GCNGC 2 cut(s) 121, 275
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 331
SchI GAGTC 3 cut(s) 168, 302, 398
ScrFI CCNGG 1 cut(s) 386
SetI ASST 9 cut(s) 41, 72, 125, 181, 235, 354, 489, 509, 544
SfcI CTRYAG 1 cut(s) 364
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 62, 480
Sse9I AATT 3 cut(s) 326, 403, 442
SsiI CCGC 1 cut(s) 86
SspMI CTAG 3 cut(s) 153, 461, 567
StyD4I CCNGG 1 cut(s) 384
TaaI ACNGT 3 cut(s) 46, 249, 368
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 23
TasI AATT 3 cut(s) 326, 403, 442
TfiI GAWTC 1 cut(s) 498
Tru1I TTAA 2 cut(s) 102, 108
Tru9I TTAA 2 cut(s) 102, 108
TscAI CASTG 2 cut(s) 49, 453
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 120, 274
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 2 cut(s) 49, 453
VpaK11BI GGWCC 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 3 cut(s) 153, 461, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.