RchiOBHm_Chr5g0016411

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000890
Physical Location & Seq
Reverse (-)
11287880 .. 11288485
606 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29678

Sequence Viewer

Length: 495 bp
ATGAATTGGATTAAACTTAATGTTGATGGTGCCAGAAATCATGCAGGTATGATTAGTGCTGGTGGAGTTGTGAGGGATCATTCTGGGTCTTGGTTGTGTGGGTTCTTTGCTAACTCTGGGTGTGGTACTGTTCTGCAAGCTGAATTTTGGGGTCTCCTACTTGGTCTCAAAATGTCTATTGATGCTCATTATCAACATGTGTTGGTTGAATCTGATTCTGAAGTCCTTGTCAAGTTGATGAATGATGGTGTGGATGCTTTGCACCCTTTGAAGTCTGTGATTAATAGTTGTCAGGCTCTTCAAAGGCAGTTTCAAAGGTGTGAAATAAAGCATATCTACAGGGAAGTAAACAAGGTTGCTGATGTGTTGTCCAAGATTGGATTGGATTCTGAGATTGGAATGCACTTCATGATGCAGCCTCCTCCACAAGTTATCACTATTCTGTTGGATGATTCGTGTGAAACTCCTTGTTTTAGGAGCATACCTTGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

164

Amino Acids

18.17

Weight (kDa)

5.92

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 125 2.6e-27 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 29
AclWI GGATC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 4 cut(s) 209, 271, 302, 314
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 2 cut(s) 158, 170
AlwI GGATC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 415
ApoI RAATTY 1 cut(s) 143
AseI ATTAAT 1 cut(s) 282
BanI GGYRCC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 427
BccI CCATC 2 cut(s) 20, 239
BcoDI GTCTC 2 cut(s) 158, 170
BfaI CTAG 1 cut(s) 493
BfmI CTRYAG 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 35
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
BmiI GGNNCC 1 cut(s) 31
BmsI GCATC 3 cut(s) 172, 244, 402
BsaI GGTCTC 2 cut(s) 158, 170
BseGI GGATG 2 cut(s) 259, 454
BseMII CTCAG 1 cut(s) 381
BseRI GAGGAG 1 cut(s) 411
BseXI GCAGC 1 cut(s) 427
BshNI GGYRCC 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 158, 170
BsmI GAATGC 1 cut(s) 405
Bso31I GGTCTC 2 cut(s) 158, 170
Bsp143I GATC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 382
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 29
BspTNI GGTCTC 2 cut(s) 158, 170
BssMI GATC 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 259, 454
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 158, 170
BstMBI GATC 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 427
BtsCI GGATG 2 cut(s) 259, 454
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 138
CciI TCATGA 1 cut(s) 408
Csp6I GTAC 1 cut(s) 126
CviAII CATG 3 cut(s) 41, 197, 409
CviJI RGCY 3 cut(s) 140, 296, 418
CviKI_1 RGCY 3 cut(s) 140, 296, 418
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 1 cut(s) 390
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco31I GGTCTC 2 cut(s) 158, 170
Eco57I CTGAAG 1 cut(s) 240
FaeI CATG 3 cut(s) 44, 200, 412
FaiI YATR 6 cut(s) 42, 50, 198, 333, 410, 482
FatI CATG 3 cut(s) 40, 196, 408
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 2 cut(s) 266, 461
Fsp4HI GCNGC 1 cut(s) 416
FspBI CTAG 1 cut(s) 493
GluI GCNGC 1 cut(s) 416
Hin1II CATG 3 cut(s) 44, 200, 412
HinfI GANTC 4 cut(s) 209, 215, 386, 452
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 3 cut(s) 214, 220, 391
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 5 cut(s) 44, 136, 262, 403, 415
HpyF3I CTNAG 1 cut(s) 390
Hsp92II CATG 3 cut(s) 44, 200, 412
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 477
LpnPI CCDG 7 cut(s) 30, 45, 46, 69, 102, 278, 325
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 3 cut(s) 172, 244, 402
MaeI CTAG 1 cut(s) 493
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 290
MluCI AATT 2 cut(s) 4, 143
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 3 cut(s) 66, 429, 432
MseI TTAA 3 cut(s) 12, 18, 282
Mva1269I GAATGC 1 cut(s) 405
NdeII GATC 1 cut(s) 76
NlaIII CATG 3 cut(s) 44, 200, 412
NlaIV GGNNCC 1 cut(s) 31
NspI RCATGY 1 cut(s) 200
PagI TCATGA 1 cut(s) 408
PciI ACATGT 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 303
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 4 cut(s) 209, 215, 386, 452
PkrI GCNGC 1 cut(s) 417
PscI ACATGT 1 cut(s) 196
PshBI ATTAAT 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 31
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 3 cut(s) 12, 18, 282
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 1 cut(s) 76
SetI ASST 5 cut(s) 49, 142, 320, 357, 487
SfaNI GCATC 3 cut(s) 172, 244, 402
SfcI CTRYAG 1 cut(s) 337
Sse9I AATT 2 cut(s) 4, 143
SspMI CTAG 1 cut(s) 493
TaaI ACNGT 1 cut(s) 130
TasI AATT 2 cut(s) 4, 143
TfiI GAWTC 4 cut(s) 209, 215, 386, 452
Tru1I TTAA 3 cut(s) 12, 18, 282
Tru9I TTAA 3 cut(s) 12, 18, 282
TseI GCWGC 1 cut(s) 415
TspDTI ATGAA 3 cut(s) 17, 254, 397
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XspI CTAG 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.