RLG00000017287

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000890
Physical Location & Seq
Forward (+)
14980517 .. 14982204
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017287

Sequence Viewer

Length: 1338 bp
ATGGTGTTGAAGAAAGTTCTCGCAGTTGAAGCAGCAGTTGCGAACTGGTACAAGCATTTCGTACCAGCTTTTGCAAGGGAGGTACTGGAGGAAATTTATTTTTGGGCTACGAAAAATGCAGAAAGATATGAGCAATTTCAAAACTCTATCACATTTATGATGCTCTTGTTCTTTACATCCCGTAAGATTTTGCTAGGAATGGTAGGATTGGTGTGGGTGGCGCTTTCGTTTTTGGTAGGGTCGGTTTGGGCAGCGTTTTATATTCTAGCAGGATCAATATGGGCAGCGATTTCTTTCGTAGTAGGATTGATTTGGGCAGCGTTTTCTATTCTAGTAGGGTCAATATGGGCAGCGATTTCTTTCGTAGTAGGATTGATTCGGGCAGCGTTTTCTATTCTAGTAGGATGGGCAGCGATTTCTTTCGAAGTAGGATTGATTTGGGCAGCGGTTCCTTTTTTGCTAGGTTCTGCTTTGATTTTTTATGTTGTCTTTTTCATTTGGAGAGACCATGCTCAGCATGCGTTGTTTCTGATAAAGAAAAAGGAATTTGCTTTTGCTGGAACTGCCGCTTGCTTAGGGTTGCTGCTCCTCTACCGTTCAGCAAGCTTCAGTCTTCTTGACACAGTTTATCTTATCATCATGGAAACCCTAGTAATTTCTCTAATATATTTGATGATAAAGGAGAGAATACCCGAGGGATACCAGTCAAAAACCTTTTGGGGGAGTTATGATCCTTCTAATTACCATGAAATCTTCTATCGATCTGTGTTTTTTGAGCCCTTTTCCTTTTTGAAGGACCTCTACCTCCGTCTCTGCGATTCCCACATCGTCCTCAATGAAGCCAATCTGCAATGTACTTCTTCTAGAGTTTTCAAGTTAAATACTGATGGCAACAACAAGCGGAGCTCAGAAGGGAATCTAAGTGCTGGGGGTGTTTTGCGTGATTCTGATGGTAAATGGTTCAAAGGTTTTATAGCTAATTTCGGTAGTGGTGTTGTTATTGAATTTGAGGCTGAGTTATTGGGTCTTCTCTATGGCTTGCAATTGGCGAGGCATAATGATATTAGAATCCTGGAAGTAGAGTGTGACTCCAAGGCTGTTGTTGATCTCATCGTGAACTCTATCTTGGAAAGCCACCCTCTATACGATCTGCACCTTAACTGCAAAAAACTGATCTTTGGTGACTGGAACTGTAGTATTCGTCATATACATCGTGAGCAAAACAAGGTTGCAGATAATCTTGCCAATTTGGGGCATGATGTAGGTCTTGGCATTCATCCTTTGGATCATCCCCCTCCTTCAGTCTTGAGCCTAATTGAAGCTGATCGATGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

446

Amino Acids

50.12

Weight (kDa)

6.36

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 294 - 417 2.8e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 446, 567, 901
AclWI GGATC 3 cut(s) 280, 725, 1293
AcsI RAATTY 3 cut(s) 93, 545, 1004
AcuI CTGAAG 2 cut(s) 592, 1284
AfaI GTAC 4 cut(s) 50, 63, 84, 856
AfiI CCNNNNNNNGG 2 cut(s) 720, 1251
AgsI TTSAA 8 cut(s) 10, 29, 140, 793, 874, 964, 1004, 1319
AjnI CCWGG 1 cut(s) 1071
AjuI GAANNNNNNNTTGG 2 cut(s) 1109, 1141
AluBI AGCT 5 cut(s) 68, 606, 906, 977, 1322
AluI AGCT 5 cut(s) 68, 606, 906, 977, 1322
Alw21I GWGCWC 1 cut(s) 908
Alw26I GTCTC 2 cut(s) 498, 815
AlwI GGATC 3 cut(s) 280, 725, 1293
Ama87I CYCGRG 1 cut(s) 692
ApeKI GCWGC 9 cut(s) 32, 251, 284, 317, 350, 383, 410, 443, 583
ApoI RAATTY 3 cut(s) 93, 545, 1004
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 796
AsuHPI GGTGA 1 cut(s) 1193
AsuII TTCGAA 1 cut(s) 423
AvaI CYCGRG 1 cut(s) 692
AvaII GGWCC 1 cut(s) 796
BanII GRGCYC 2 cut(s) 780, 908
BarI GAAGNNNNNNTAC 2 cut(s) 785, 817
BbsI GAAGAC 2 cut(s) 605, 1019
Bbv12I GWGCWC 1 cut(s) 908
BbvI GCAGC 9 cut(s) 44, 263, 296, 329, 362, 395, 422, 455, 570
BccI CCATC 3 cut(s) 399, 881, 944
BciT130I CCWGG 1 cut(s) 1073
BciVI GTATCC 1 cut(s) 692
BcoDI GTCTC 2 cut(s) 498, 815
BfaI CTAG 7 cut(s) 194, 266, 332, 398, 461, 650, 864
BfmI CTRYAG 1 cut(s) 1192
BfoI RGCGCY 1 cut(s) 224
BfuI GTATCC 1 cut(s) 692
BlpI GCTNAGC 1 cut(s) 513
Bme1390I CCNGG 1 cut(s) 1073
Bme18I GGWCC 1 cut(s) 796
BmeT110I CYCGRG 1 cut(s) 692
BmgT120I GGNCC 1 cut(s) 796
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 1073
BmsI GCATC 2 cut(s) 150, 1319
BpiI GAAGAC 2 cut(s) 605, 1019
BplI GAGNNNNNCTC 2 cut(s) 1073, 1105
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 574
Bpu1102I GCTNAGC 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 1327
Bsa29I ATCGAT 2 cut(s) 760, 1327
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 693, 1092
Bsc4I CCNNNNNNNGG 2 cut(s) 720, 1251
Bse1I ACTGG 4 cut(s) 50, 90, 703, 1190
Bse3DI GCAATG 1 cut(s) 857
BseBI CCWGG 1 cut(s) 1073
BseCI ATCGAT 2 cut(s) 760, 1327
BseDI CCNNGG 2 cut(s) 693, 1092
BseGI GGATG 4 cut(s) 176, 410, 1276, 1288
BseLI CCNNNNNNNGG 2 cut(s) 720, 1251
BseMI GCAATG 1 cut(s) 857
BseMII CTCAG 3 cut(s) 527, 921, 1005
BseNI ACTGG 4 cut(s) 50, 90, 703, 1190
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 9 cut(s) 44, 263, 296, 329, 362, 395, 422, 455, 570
BseYI CCCAGC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 1136
BshVI ATCGAT 2 cut(s) 760, 1327
BsiHKAI GWGCWC 1 cut(s) 908
BsiHKCI CYCGRG 1 cut(s) 692
BslI CCNNNNNNNGG 2 cut(s) 720, 1251
BsmAI GTCTC 2 cut(s) 498, 815
BsmBI CGTCTC 1 cut(s) 815
BsmI GAATGC 1 cut(s) 1272
Bso31I GGTCTC 1 cut(s) 498
BsoBI CYCGRG 1 cut(s) 692
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 2 cut(s) 780, 908
Bsp143I GATC 8 cut(s) 272, 730, 761, 1105, 1147, 1173, 1285, 1324
Bsp1720I GCTNAGC 1 cut(s) 513
BspACI CCGC 3 cut(s) 446, 567, 901
BspCNI CTCAG 3 cut(s) 526, 920, 1006
BspDI ATCGAT 2 cut(s) 760, 1327
BspLI GGNNCC 1 cut(s) 450
BspPI GGATC 3 cut(s) 280, 725, 1293
BspT104I TTCGAA 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 857
BsrI ACTGG 4 cut(s) 50, 90, 703, 1190
BssECI CCNNGG 2 cut(s) 693, 1092
BssMI GATC 8 cut(s) 272, 730, 761, 1105, 1147, 1173, 1285, 1324
BssT1I CCWWGG 1 cut(s) 1092
Bst2UI CCWGG 1 cut(s) 1073
Bst4CI ACNGT 3 cut(s) 596, 625, 1193
BstAPI GCANNNNNTGC 1 cut(s) 38
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 4 cut(s) 519, 571, 604, 1040
BstDEI CTNAG 5 cut(s) 513, 574, 907, 920, 1014
BstF5I GGATG 4 cut(s) 176, 410, 1276, 1288
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 8 cut(s) 275, 733, 764, 1108, 1150, 1176, 1288, 1327
BstMAI GTCTC 2 cut(s) 498, 815
BstMBI GATC 8 cut(s) 272, 730, 761, 1105, 1147, 1173, 1285, 1324
BstMWI GCNNNNNNNGC 4 cut(s) 29, 38, 518, 563
BstNI CCWGG 1 cut(s) 1073
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 1071
BstSFI CTRYAG 1 cut(s) 1192
BstV1I GCAGC 9 cut(s) 44, 263, 296, 329, 362, 395, 422, 455, 570
BstV2I GAAGAC 2 cut(s) 605, 1019
Bsu15I ATCGAT 2 cut(s) 760, 1327
BsuI GTATCC 1 cut(s) 692
BsuTUI ATCGAT 2 cut(s) 760, 1327
BtsCI GGATG 4 cut(s) 176, 410, 1276, 1288
Cac8I GCNNGC 4 cut(s) 519, 571, 604, 1040
CfoI GCGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 796
ClaI ATCGAT 2 cut(s) 760, 1327
Csp6I GTAC 4 cut(s) 49, 62, 83, 855
CviAII CATG 5 cut(s) 509, 518, 640, 746, 1256
CviQI GTAC 4 cut(s) 49, 62, 83, 855
DdeI CTNAG 5 cut(s) 513, 574, 907, 920, 1014
DpnI GATC 8 cut(s) 274, 732, 763, 1107, 1149, 1175, 1287, 1326
DpnII GATC 8 cut(s) 272, 730, 761, 1105, 1147, 1173, 1285, 1324
Ecl136II GAGCTC 1 cut(s) 906
Eco130I CCWWGG 1 cut(s) 1092
Eco24I GRGCYC 2 cut(s) 780, 908
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 796
Eco53kI GAGCTC 1 cut(s) 906
Eco57I CTGAAG 2 cut(s) 592, 1284
Eco88I CYCGRG 1 cut(s) 692
EcoICRI GAGCTC 1 cut(s) 906
EcoO109I RGGNCCY 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 1071
EcoT14I CCWWGG 1 cut(s) 1092
EcoT38I GRGCYC 2 cut(s) 780, 908
ErhI CCWWGG 1 cut(s) 1092
Esp3I CGTCTC 1 cut(s) 815
FaeI CATG 5 cut(s) 512, 521, 643, 749, 1259
FatI CATG 5 cut(s) 508, 517, 639, 745, 1255
FokI GGATG 4 cut(s) 163, 417, 1263, 1275
FriOI GRGCYC 2 cut(s) 780, 908
FspBI CTAG 7 cut(s) 194, 266, 332, 398, 461, 650, 864
GlaI GCGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 1 cut(s) 107
HaeII RGCGCY 1 cut(s) 224
HhaI GCGC 1 cut(s) 223
Hin1II CATG 5 cut(s) 512, 521, 643, 749, 1259
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 604
HinfI GANTC 6 cut(s) 376, 818, 916, 944, 1068, 1088
HphI GGTGA 1 cut(s) 1193
Hpy166II GTNNAC 1 cut(s) 1117
Hpy188I TCNGA 3 cut(s) 531, 910, 949
Hpy188III TCNNGA 5 cut(s) 617, 864, 1114, 1214, 1306
Hpy8I GTNNAC 1 cut(s) 1117
HpyAV CCTTC 4 cut(s) 744, 787, 905, 1308
HpyCH4III ACNGT 3 cut(s) 596, 625, 1193
HpyCH4V TGCA 7 cut(s) 74, 119, 850, 1042, 1153, 1164, 1232
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 38, 518, 563
HpyF3I CTNAG 5 cut(s) 513, 574, 907, 920, 1014
Hsp92II CATG 5 cut(s) 512, 521, 643, 749, 1259
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 8 cut(s) 272, 730, 761, 1105, 1147, 1173, 1285, 1324
LmnI GCTCC 2 cut(s) 591, 903
Lsp1109I GCAGC 9 cut(s) 44, 263, 296, 329, 362, 395, 422, 455, 570
LweI GCATC 2 cut(s) 150, 1319
MaeI CTAG 7 cut(s) 194, 266, 332, 398, 461, 650, 864
MaeIII GTNAC 2 cut(s) 1085, 1181
MalI GATC 8 cut(s) 274, 732, 763, 1107, 1149, 1175, 1287, 1326
MboI GATC 8 cut(s) 272, 730, 761, 1105, 1147, 1173, 1285, 1324
MboII GAAGA 5 cut(s) 22, 605, 745, 852, 1019
MfeI CAATTG 1 cut(s) 1043
MhlI GDGCHC 2 cut(s) 780, 908
MlyI GAGTC 1 cut(s) 1082
MseI TTAA 2 cut(s) 878, 1158
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 1073
MunI CAATTG 1 cut(s) 1043
Mva1269I GAATGC 1 cut(s) 1272
MvaI CCWGG 1 cut(s) 1073
MwoI GCNNNNNNNGC 4 cut(s) 29, 38, 518, 563
NdeII GATC 8 cut(s) 272, 730, 761, 1105, 1147, 1173, 1285, 1324
NlaIII CATG 5 cut(s) 512, 521, 643, 749, 1259
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 2 cut(s) 1085, 1181
NspI RCATGY 1 cut(s) 521
NspV TTCGAA 1 cut(s) 423
PaeI GCATGC 1 cut(s) 521
PctI GAATGC 1 cut(s) 1272
PfeI GAWTC 5 cut(s) 376, 818, 916, 944, 1068
PfoI TCCNGGA 1 cut(s) 1071
PleI GAGTC 1 cut(s) 1082
PpsI GAGTC 1 cut(s) 1082
PpuMI RGGWCCY 1 cut(s) 796
Psp124BI GAGCTC 1 cut(s) 908
Psp5II RGGWCCY 1 cut(s) 796
Psp6I CCWGG 1 cut(s) 1071
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 1 cut(s) 1071
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 1 cut(s) 796
PspPPI RGGWCCY 1 cut(s) 796
RsaI GTAC 4 cut(s) 50, 63, 84, 856
RsaNI GTAC 4 cut(s) 49, 62, 83, 855
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 908
SaqAI TTAA 2 cut(s) 878, 1158
Sau3AI GATC 8 cut(s) 272, 730, 761, 1105, 1147, 1173, 1285, 1324
Sau96I GGNCC 1 cut(s) 796
SchI GAGTC 1 cut(s) 1082
ScrFI CCNGG 1 cut(s) 1073
SduI GDGCHC 2 cut(s) 780, 908
SfaNI GCATC 2 cut(s) 150, 1319
SfcI CTRYAG 1 cut(s) 1192
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 1 cut(s) 796
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 1306
SmoI CTYRAG 1 cut(s) 1306
SphI GCATGC 1 cut(s) 521
SsiI CCGC 3 cut(s) 446, 567, 901
SspMI CTAG 7 cut(s) 194, 266, 332, 398, 461, 650, 864
SstI GAGCTC 1 cut(s) 908
StyD4I CCNGG 1 cut(s) 1071
StyI CCWWGG 1 cut(s) 1092
TaaI ACNGT 3 cut(s) 596, 625, 1193
TaqI TCGA 3 cut(s) 423, 760, 1327
TatI WGTACW 1 cut(s) 854
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 5 cut(s) 376, 818, 916, 944, 1068
Tru1I TTAA 2 cut(s) 878, 1158
Tru9I TTAA 2 cut(s) 878, 1158
TseFI GTSAC 2 cut(s) 1085, 1181
TseI GCWGC 9 cut(s) 32, 251, 284, 317, 350, 383, 410, 443, 583
Tsp45I GTSAC 2 cut(s) 1085, 1181
TspDTI ATGAA 4 cut(s) 484, 762, 852, 1265
TspGWI ACGGA 1 cut(s) 797
VpaK11BI GGWCC 1 cut(s) 796
XapI RAATTY 3 cut(s) 93, 545, 1004
XbaI TCTAGA 1 cut(s) 863
XceI RCATGY 1 cut(s) 521
XspI CTAG 7 cut(s) 194, 266, 332, 398, 461, 650, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.