RchiOBHm_Chr2g0152401

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000890
Physical Location & Seq
Forward (+)
69807352 .. 69807932
581 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52155

Sequence Viewer

Length: 498 bp
ATGCATTACTTTAAATTAAATGTTGATGGTGCTAGAAGTATTAATGGGAAAATTGGTGTTGGCGGTGTCTTAAGGGATTCTACGGGTGCTTGGGTTTCTGGGTTTTATGCTAATCTTGGATGCGGATCTGTCCTTCAGGCGGAAGCTTGGGGGTTACTTCTGGGTCTACAAATGGCCATCTCTCATCATGCCCATCATCTTCTGGTGGAAAGTGATTCTCAGGTGTTAGTCTCCCTCGTCCAGCATGATGTGGATGATTTGCACCCCTTAAAAACCATTACTGATTGTTGCCAAACCCTCCAAAGACAATTGCATAGCTGCGATCTTAAGCATGTCTACCGCGAAGTTAATCAGGTTGCTGACATTCTCTCCAAATTTGGTTTGGATGCAGAGATTGGAGTTCATTTCATGGAGCAACCCCCTCCACAAGTTAATTCTAGCTTGCTTGATGACCTGTGTGGCAGTCCTAGAATTAGGACTATAAATTCTGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

165

Amino Acids

18.09

Weight (kDa)

5.71

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 126 1.6e-26 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 166, 336
AccII CGCG 1 cut(s) 342
AciI CCGC 4 cut(s) 63, 123, 140, 340
AclWI GGATC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 2 cut(s) 374, 484
AcuI CTGAAG 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 139
AflII CTTAAG 2 cut(s) 70, 326
AluBI AGCT 4 cut(s) 146, 318, 441, 493
AluI AGCT 4 cut(s) 146, 318, 441, 493
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 1 cut(s) 133
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 1 cut(s) 318
ApoI RAATTY 2 cut(s) 374, 484
AseI ATTAAT 1 cut(s) 42
BalI TGGCCA 1 cut(s) 176
BbvI GCAGC 1 cut(s) 305
BccI CCATC 3 cut(s) 20, 185, 201
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 3 cut(s) 33, 438, 468
BfrI CTTAAG 2 cut(s) 70, 326
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
BmsI GCATC 2 cut(s) 110, 376
BsaBI GATNNNNATC 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 124
BseGI GGATG 3 cut(s) 125, 259, 391
BseJI GATNNNNATC 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 233, 480
BseXI GCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 235
BsnI GGCC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 125, 322
BspACI CCGC 4 cut(s) 63, 123, 140, 340
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 232, 481
BspFNI CGCG 1 cut(s) 342
BspPI GGATC 1 cut(s) 133
BspTI CTTAAG 2 cut(s) 70, 326
BssMI GATC 2 cut(s) 125, 322
BstAFI CTTAAG 2 cut(s) 70, 326
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 2 cut(s) 219, 489
BstF5I GGATG 3 cut(s) 125, 259, 391
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 2 cut(s) 128, 325
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 2 cut(s) 125, 322
BstNSI RCATGY 1 cut(s) 335
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuRI GGCC 1 cut(s) 176
BtsCI GGATG 3 cut(s) 125, 259, 391
Cac8I GCNNGC 1 cut(s) 443
CviAII CATG 4 cut(s) 188, 245, 332, 409
CviJI RGCY 5 cut(s) 146, 176, 318, 441, 493
CviKI_1 RGCY 5 cut(s) 146, 176, 318, 441, 493
DdeI CTNAG 2 cut(s) 219, 489
DpnI GATC 2 cut(s) 127, 324
DpnII GATC 2 cut(s) 125, 322
DraI TTTAAA 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 174
EciI GGCGGA 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 191, 248, 335, 412
FaiI YATR 7 cut(s) 108, 189, 246, 315, 333, 410, 482
FatI CATG 4 cut(s) 187, 244, 331, 408
FblI GTMKAC 2 cut(s) 166, 336
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 3 cut(s) 132, 266, 398
Fsp4HI GCNGC 1 cut(s) 319
FspBI CTAG 3 cut(s) 33, 438, 468
GluI GCNGC 1 cut(s) 319
HaeIII GGCC 1 cut(s) 176
Hin1II CATG 4 cut(s) 191, 248, 335, 412
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 2 cut(s) 77, 215
Hpy166II GTNNAC 2 cut(s) 167, 337
Hpy188I TCNGA 1 cut(s) 490
Hpy8I GTNNAC 2 cut(s) 167, 337
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 4, 262, 313, 389
HpyF3I CTNAG 2 cut(s) 219, 489
Hsp92II CATG 4 cut(s) 191, 248, 335, 412
Kzo9I GATC 2 cut(s) 125, 322
LmnI GCTCC 1 cut(s) 412
LpnPI CCDG 8 cut(s) 84, 122, 146, 188, 206, 254, 338, 467
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 2 cut(s) 110, 376
MaeI CTAG 3 cut(s) 33, 438, 468
MaeIII GTNAC 1 cut(s) 153
MalI GATC 2 cut(s) 127, 324
MboI GATC 2 cut(s) 125, 322
MboII GAAGA 1 cut(s) 191
MfeI CAATTG 1 cut(s) 308
MflI RGATCY 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 7 cut(s) 14, 51, 308, 374, 433, 471, 484
MluNI TGGCCA 1 cut(s) 176
MnlI CCTC 3 cut(s) 245, 308, 432
Mox20I TGGCCA 1 cut(s) 176
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 176
MseI TTAA 8 cut(s) 12, 17, 42, 71, 269, 327, 348, 432
Msp20I TGGCCA 1 cut(s) 176
MspCI CTTAAG 2 cut(s) 70, 326
MunI CAATTG 1 cut(s) 308
MvnI CGCG 1 cut(s) 342
NdeII GATC 2 cut(s) 125, 322
NlaIII CATG 4 cut(s) 191, 248, 335, 412
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 335
PfeI GAWTC 2 cut(s) 77, 215
PkrI GCNGC 1 cut(s) 320
PshBI ATTAAT 1 cut(s) 42
PsuI RGATCY 1 cut(s) 125
SaqAI TTAA 8 cut(s) 12, 17, 42, 71, 269, 327, 348, 432
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 2 cut(s) 125, 322
SetI ASST 7 cut(s) 148, 225, 320, 357, 443, 456, 495
SfaNI GCATC 2 cut(s) 110, 376
SmlI CTYRAG 2 cut(s) 70, 326
SmoI CTYRAG 2 cut(s) 70, 326
Sse9I AATT 7 cut(s) 14, 51, 308, 374, 433, 471, 484
SsiI CCGC 4 cut(s) 63, 123, 140, 340
SspMI CTAG 3 cut(s) 33, 438, 468
TasI AATT 7 cut(s) 14, 51, 308, 374, 433, 471, 484
TfiI GAWTC 2 cut(s) 77, 215
Tru1I TTAA 8 cut(s) 12, 17, 42, 71, 269, 327, 348, 432
Tru9I TTAA 8 cut(s) 12, 17, 42, 71, 269, 327, 348, 432
TseI GCWGC 1 cut(s) 318
TspDTI ATGAA 2 cut(s) 392, 397
Vha464I CTTAAG 2 cut(s) 70, 326
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 2 cut(s) 374, 484
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmiI GTMKAC 2 cut(s) 166, 336
XspI CTAG 3 cut(s) 33, 438, 468
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.