RchiOBHm_Chr5g0074971

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000890
Physical Location & Seq
Forward (+)
80841956 .. 80842584
629 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34972

Sequence Viewer

Length: 525 bp
ATGGAACTTGATTGGTCTGCTTGGATCTCTGCAAATGTTCACTGTAAGAGAGAATGTTATGGTGGATTAAAATGGTGTTCAGTGTTTGTTTACACTTGTTGGTTTCTATGGAAGTGGAGAAACAAACTGGCTTTTGATTCTAACTTCAATTTTCCATATAATCCTAGCAAATTGATCATTGATGCTGTCAGAGAATGGACCTCTGCTAATGTGACCAAGGCCAATTCTGATGGTAGCATCAATATCAGCATGGTGTGGAGTAAACCTTCAGTCAACTTTTACAAACTTAATGTTGATGGTGCCCGAAGTCAGAATGGACAAATTGGAGCTGGTGGAGTTTTGAGGGATTACTATGGTAGTTGGATTTCTGGATTCAGTGCTAATTTGGGATGTGGATCTGTTCTTAATGCTGAAATCTGGGGTCTTCTTCTTGGATTGAGATTGGCTCATAATCTTTCATGCCTATATCTGATGGTTGAAAGTGATTCTGAAGTTCTAGTTAACATGATCAAACAGGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

174

Amino Acids

19.57

Weight (kDa)

8.15

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 97 - 172 3.5e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AclWI GGATC 2 cut(s) 32, 403
AcuI CTGAAG 2 cut(s) 252, 510
AgsI TTSAA 2 cut(s) 148, 479
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
AlwI GGATC 2 cut(s) 32, 403
AoxI GGCC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 198
AvaII GGWCC 1 cut(s) 198
BaeGI GKGCMC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 416
BccI CCATC 3 cut(s) 224, 290, 466
BclI TGATCA 2 cut(s) 174, 507
BfaI CTAG 2 cut(s) 165, 497
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 301
BmsI GCATC 2 cut(s) 172, 246
BpiI GAAGAC 1 cut(s) 416
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BsaBI GATNNNNATC 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 394
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 394
BseNI ACTGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 304
BshFI GGCC 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 299
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 4 cut(s) 24, 174, 395, 507
BspANI GGCC 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 2 cut(s) 32, 403
BspT107I GGYRCC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 4 cut(s) 24, 174, 395, 507
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 44
BstF5I GGATG 1 cut(s) 395
BstKTI GATC 4 cut(s) 27, 177, 398, 510
BstMBI GATC 4 cut(s) 24, 174, 395, 507
BstSLI GKGCMC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 2 cut(s) 24, 395
BstYI RGATCY 2 cut(s) 24, 395
BsuRI GGCC 1 cut(s) 221
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 3 cut(s) 40, 87, 382
Cfr13I GGNCC 1 cut(s) 198
CviAII CATG 3 cut(s) 250, 459, 505
CviJI RGCY 4 cut(s) 131, 221, 329, 446
CviKI_1 RGCY 4 cut(s) 131, 221, 329, 446
DpnI GATC 4 cut(s) 26, 176, 397, 509
DpnII GATC 4 cut(s) 24, 174, 395, 507
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 198
Eco57I CTGAAG 2 cut(s) 252, 510
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 3 cut(s) 253, 462, 508
FatI CATG 3 cut(s) 249, 458, 504
FbaI TGATCA 2 cut(s) 174, 507
FokI GGATG 1 cut(s) 402
FspBI CTAG 2 cut(s) 165, 497
HaeIII GGCC 1 cut(s) 221
Hin1II CATG 3 cut(s) 253, 462, 508
HincII GTYRAC 2 cut(s) 274, 502
HindII GTYRAC 2 cut(s) 274, 502
HinfI GANTC 3 cut(s) 137, 372, 485
HpaI GTTAAC 1 cut(s) 502
Hpy166II GTNNAC 5 cut(s) 40, 91, 263, 274, 502
Hpy188I TCNGA 5 cut(s) 191, 229, 312, 471, 490
Hpy188III TCNNGA 1 cut(s) 369
Hpy8I GTNNAC 5 cut(s) 40, 91, 263, 274, 502
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 32
Hsp92II CATG 3 cut(s) 253, 462, 508
Ksp22I TGATCA 2 cut(s) 174, 507
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 4 cut(s) 24, 174, 395, 507
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 5 cut(s) 113, 315, 354, 403, 500
LweI GCATC 2 cut(s) 172, 246
MaeI CTAG 2 cut(s) 165, 497
MaeIII GTNAC 1 cut(s) 211
MalI GATC 4 cut(s) 26, 176, 397, 509
MboI GATC 4 cut(s) 24, 174, 395, 507
MboII GAAGA 2 cut(s) 416, 419
MflI RGATCY 2 cut(s) 24, 395
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 5 cut(s) 148, 170, 223, 321, 382
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 2 cut(s) 211, 336
MseI TTAA 4 cut(s) 68, 288, 405, 501
NdeII GATC 4 cut(s) 24, 174, 395, 507
NlaIII CATG 3 cut(s) 253, 462, 508
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 211
PfeI GAWTC 3 cut(s) 137, 372, 485
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 198
PsuI RGATCY 2 cut(s) 24, 395
SaqAI TTAA 4 cut(s) 68, 288, 405, 501
Sau3AI GATC 4 cut(s) 24, 174, 395, 507
Sau96I GGNCC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 304
SetI ASST 3 cut(s) 203, 268, 331
SfaNI GCATC 2 cut(s) 172, 246
SinI GGWCC 1 cut(s) 198
Sse9I AATT 5 cut(s) 148, 170, 223, 321, 382
SspMI CTAG 2 cut(s) 165, 497
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 44
TasI AATT 5 cut(s) 148, 170, 223, 321, 382
TfiI GAWTC 3 cut(s) 137, 372, 485
Tru1I TTAA 4 cut(s) 68, 288, 405, 501
Tru9I TTAA 4 cut(s) 68, 288, 405, 501
TscAI CASTG 3 cut(s) 47, 87, 382
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 447
TspRI CASTG 3 cut(s) 47, 87, 382
VpaK11BI GGWCC 1 cut(s) 198
XspI CTAG 2 cut(s) 165, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.