RchiOBHm_Chr2g0144631

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000890
Physical Location & Seq
Forward (+)
62204704 .. 62205864
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51455

Sequence Viewer

Length: 1134 bp
ATGCATATTCCTGTTGGTTTCGAAGGAAGTGGCCCTGACAGAATTATATGGGGTGAGACTTCTAATGGGTGTTTCTCTGTGAAATCAGCTTACTTGGCCTTGATTAAGGAAGAAAATTATGATGCGTTTCCCTGGTACTTTATTTGGAAACTCCCTATTCCTCCTAAACTAAAGACATTTATGTGGATGTTATGTCAAGGCAGAATTCTCACTAATGTTGAAAGAGTTAAAAGAAGGTTAGCTTCTGATCCTTCTTGCCCTATTTGTCATGAACATCCGGAAACTCTTATTCACATGCTTAGAGATTGTCCCTCTGCTAAGAATGTGTGGAATGGTGTTGTGTGCCTAGATACTATTGCAAGGTCTATGCAATTAGATTGGTATGATTGGTTGGCTGCTAACACTCACTGCAATAGACCTTGCTTTGATGGTCTAAAATGGTGTGGTGTTTTTGTATATACATGCTGGTACATATGGAAATGGCGCAACATGGCAGTTTTTAATGGTAACTTCTACCCTCTTTCAATTTCTAGCAAAATCATTTTAGATGCTGCTAATGATTGGAAGATTGCTAATATTGGTTCTGTTGCCAGTCGTAGAACTTCTACTATATTTTTATCTTGGTCTAAACCTCCTGACCACTACTTTAAACTTAATGTTGATGGAGCTAGGGGACCAAATGGACTTATTGGTGCAGGAGGGGTTTTGAGGGATCACAGTGGTACTTGGATTTCTGGCTTTTCTGCTAGTCTTGGTAATGGAACTGTTTTACAAGCTGAGGCTTGGGGGCTCTTACTTGGTCTACAATTGGCTAGCAAAAATCGCTGCCAACATCTTATTGTTGAATGTGACTCTGAGGTTTTAGTGAACTTAATCAACAATGGGGTTAATGACCTACATCCTCTTCGGTCAGTTTTGTGCAGCTGTCAATTTTTGCGGGGACAGTTCTTGAGTTGTGACATTCGACATGTTTATCGAGAAATAAACTTGGTTGCTGATTTGCTGTCTAAAGATGGTGTTGGTGCTGATCTTGGAGTGCATTTCATGGAGCAACCTCCTCCGCAAGTTATCAATGCATTGCTTGATGATTTGTGTGCTAGTCCTAGATCTAGGACTGTAATTTGTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

377

Amino Acids

42.38

Weight (kDa)

7.49

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 25 - 110 1.2e-20 zinc-binding in reverse transcriptase
RVT_3 PF13456 219 - 338 1e-25 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 802
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 2 cut(s) 937, 1061
AclWI GGATC 2 cut(s) 242, 720
AcsI RAATTY 1 cut(s) 204
AfaI GTAC 3 cut(s) 137, 470, 724
AflIII ACRYGT 1 cut(s) 967
AgsI TTSAA 3 cut(s) 221, 525, 845
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 5 cut(s) 89, 242, 668, 776, 924
AluI AGCT 5 cut(s) 89, 242, 668, 776, 924
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 2 cut(s) 242, 720
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 2 cut(s) 31, 96
ApeKI GCWGC 4 cut(s) 395, 551, 825, 921
ApoI RAATTY 1 cut(s) 204
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 32, 674
AsuHPI GGTGA 1 cut(s) 65
AsuII TTCGAA 1 cut(s) 21
AsuNHI GCTAGC 1 cut(s) 812
AvaII GGWCC 1 cut(s) 674
BanII GRGCYC 1 cut(s) 792
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 4 cut(s) 382, 538, 812, 933
BccI CCATC 3 cut(s) 422, 656, 1007
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 8 cut(s) 347, 531, 669, 747, 813, 1098, 1104, 1110
BglII AGATCT 1 cut(s) 1106
BisI GCNGC 4 cut(s) 396, 552, 826, 922
BlsI GCNGC 4 cut(s) 397, 553, 827, 923
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 674
BmgT120I GGNCC 2 cut(s) 32, 674
BmiI GGNNCC 1 cut(s) 675
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 112, 538
BmtI GCTAGC 1 cut(s) 816
Bpu10I CCTNAGC 1 cut(s) 777
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 970
BsaJI CCNNGG 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 591
Bse3DI GCAATG 1 cut(s) 1076
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 3 cut(s) 192, 274, 898
BseMI GCAATG 1 cut(s) 1076
BseMII CTCAG 2 cut(s) 768, 846
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 1 cut(s) 1047
BseXI GCAGC 4 cut(s) 382, 538, 812, 933
BsgI GTGCAG 2 cut(s) 714, 940
BshFI GGCC 2 cut(s) 33, 98
BsiSI CCGG 1 cut(s) 278
BslFI GGGAC 3 cut(s) 294, 687, 954
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 3 cut(s) 294, 687, 954
BsnI GGCC 2 cut(s) 33, 98
Bsp119I TTCGAA 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 792
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 4 cut(s) 247, 712, 1027, 1106
BspACI CCGC 2 cut(s) 937, 1061
BspANI GGCC 2 cut(s) 33, 98
BspCNI CTCAG 2 cut(s) 769, 847
BspEI TCCGGA 1 cut(s) 277
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 675
BspOI GCTAGC 1 cut(s) 816
BspPI GGATC 2 cut(s) 242, 720
BspT104I TTCGAA 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 1076
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 4 cut(s) 247, 712, 1027, 1106
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 4 cut(s) 719, 766, 945, 1117
Bst6I CTCTTC 1 cut(s) 909
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 814
BstDEI CTNAG 4 cut(s) 299, 318, 777, 855
BstF5I GGATG 3 cut(s) 192, 274, 898
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 4 cut(s) 250, 715, 1030, 1109
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 4 cut(s) 247, 712, 1027, 1106
BstMWI GCNNNNNNNGC 2 cut(s) 95, 822
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 3 cut(s) 298, 465, 971
BstSCI CCNGG 1 cut(s) 131
BstV1I GCAGC 4 cut(s) 382, 538, 812, 933
BstX2I RGATCY 1 cut(s) 1106
BstYI RGATCY 1 cut(s) 1106
BsuRI GGCC 2 cut(s) 33, 98
BtsCI GGATG 3 cut(s) 192, 274, 898
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 2 cut(s) 406, 724
Cac8I GCNNGC 1 cut(s) 814
CciI TCATGA 1 cut(s) 268
CfoI GCGC 1 cut(s) 486
Cfr13I GGNCC 2 cut(s) 32, 674
Csp6I GTAC 3 cut(s) 136, 469, 723
CviAII CATG 6 cut(s) 269, 295, 462, 490, 968, 1045
CviQI GTAC 3 cut(s) 136, 469, 723
DdeI CTNAG 4 cut(s) 299, 318, 777, 855
DpnI GATC 4 cut(s) 249, 714, 1029, 1108
DpnII GATC 4 cut(s) 247, 712, 1027, 1106
DraI TTTAAA 1 cut(s) 649
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
Eco24I GRGCYC 1 cut(s) 792
Eco47I GGWCC 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 131
EcoT22I ATGCAT 2 cut(s) 6, 1078
EcoT38I GRGCYC 1 cut(s) 792
FaeI CATG 6 cut(s) 272, 298, 465, 493, 971, 1048
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FaqI GGGAC 3 cut(s) 294, 687, 954
FatI CATG 6 cut(s) 268, 294, 461, 489, 967, 1044
FauI CCCGC 1 cut(s) 930
FauNDI CATATG 1 cut(s) 473
FblI GTMKAC 1 cut(s) 802
Fnu4HI GCNGC 4 cut(s) 396, 552, 826, 922
FokI GGATG 3 cut(s) 199, 261, 885
FriOI GRGCYC 1 cut(s) 792
Fsp4HI GCNGC 4 cut(s) 396, 552, 826, 922
FspBI CTAG 8 cut(s) 347, 531, 669, 747, 813, 1098, 1104, 1110
GlaI GCGC 1 cut(s) 485
GluI GCNGC 4 cut(s) 396, 552, 826, 922
HaeIII GGCC 2 cut(s) 33, 98
HapII CCGG 1 cut(s) 278
HhaI GCGC 1 cut(s) 486
Hin1II CATG 6 cut(s) 272, 298, 465, 493, 971, 1048
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HinfI GANTC 1 cut(s) 851
HpaII CCGG 1 cut(s) 278
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 803, 868
Hpy188I TCNGA 2 cut(s) 247, 856
Hpy188III TCNNGA 5 cut(s) 269, 278, 635, 949, 977
Hpy8I GTNNAC 2 cut(s) 803, 868
HpyAV CCTTC 3 cut(s) 17, 228, 261
HpyCH4III ACNGT 4 cut(s) 719, 766, 945, 1117
HpyCH4V TGCA 8 cut(s) 4, 359, 370, 411, 695, 921, 1039, 1076
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 822
HpyF3I CTNAG 4 cut(s) 299, 318, 777, 855
Hsp92II CATG 6 cut(s) 272, 298, 465, 493, 971, 1048
HspAI GCGC 1 cut(s) 484
Kpn2I TCCGGA 1 cut(s) 277
Kzo9I GATC 4 cut(s) 247, 712, 1027, 1106
LmnI GCTCC 2 cut(s) 665, 1048
Lsp1109I GCAGC 4 cut(s) 382, 538, 812, 933
LweI GCATC 2 cut(s) 112, 538
MaeI CTAG 8 cut(s) 347, 531, 669, 747, 813, 1098, 1104, 1110
MaeIII GTNAC 3 cut(s) 506, 848, 956
MalI GATC 4 cut(s) 249, 714, 1029, 1108
MboI GATC 4 cut(s) 247, 712, 1027, 1106
MboII GAAGA 3 cut(s) 122, 577, 896
MfeI CAATTG 1 cut(s) 806
MflI RGATCY 1 cut(s) 1106
MhlI GDGCHC 1 cut(s) 792
MluCI AATT 8 cut(s) 42, 115, 204, 371, 525, 806, 929, 1119
MlyI GAGTC 1 cut(s) 845
Mph1103I ATGCAT 2 cut(s) 6, 1078
MroI TCCGGA 1 cut(s) 277
MseI TTAA 7 cut(s) 105, 228, 501, 648, 654, 872, 888
MslI CAYNNNNRTG 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 924
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 133
MunI CAATTG 1 cut(s) 806
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 95, 822
NdeI CATATG 1 cut(s) 473
NdeII GATC 4 cut(s) 247, 712, 1027, 1106
NheI GCTAGC 1 cut(s) 812
NlaIII CATG 6 cut(s) 272, 298, 465, 493, 971, 1048
NlaIV GGNNCC 1 cut(s) 675
NmuCI GTSAC 2 cut(s) 848, 956
NsiI ATGCAT 2 cut(s) 6, 1078
NspI RCATGY 3 cut(s) 298, 465, 971
NspV TTCGAA 1 cut(s) 21
PagI TCATGA 1 cut(s) 268
PciI ACATGT 1 cut(s) 967
PkrI GCNGC 4 cut(s) 397, 553, 827, 923
PleI GAGTC 1 cut(s) 845
PpsI GAGTC 1 cut(s) 845
PscI ACATGT 1 cut(s) 967
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 675
PspPI GGNCC 2 cut(s) 32, 674
PsuI RGATCY 1 cut(s) 1106
PvuII CAGCTG 1 cut(s) 924
RsaI GTAC 3 cut(s) 137, 470, 724
RsaNI GTAC 3 cut(s) 136, 469, 723
RseI CAYNNNNRTG 1 cut(s) 181
SaqAI TTAA 7 cut(s) 105, 228, 501, 648, 654, 872, 888
SatI GCNGC 4 cut(s) 396, 552, 826, 922
Sau3AI GATC 4 cut(s) 247, 712, 1027, 1106
Sau96I GGNCC 2 cut(s) 32, 674
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 792
SfaNI GCATC 2 cut(s) 112, 538
SfuI TTCGAA 1 cut(s) 21
SinI GGWCC 1 cut(s) 674
SmiMI CAYNNNNRTG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 949
SmoI CTYRAG 1 cut(s) 949
Sse9I AATT 8 cut(s) 42, 115, 204, 371, 525, 806, 929, 1119
SsiI CCGC 2 cut(s) 937, 1061
SspI AATATT 1 cut(s) 577
SspMI CTAG 8 cut(s) 347, 531, 669, 747, 813, 1098, 1104, 1110
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 4 cut(s) 719, 766, 945, 1117
TaqI TCGA 3 cut(s) 21, 964, 976
TaqII GACCGA 1 cut(s) 897
TasI AATT 8 cut(s) 42, 115, 204, 371, 525, 806, 929, 1119
Tru1I TTAA 7 cut(s) 105, 228, 501, 648, 654, 872, 888
Tru9I TTAA 7 cut(s) 105, 228, 501, 648, 654, 872, 888
TscAI CASTG 2 cut(s) 413, 724
TseFI GTSAC 2 cut(s) 848, 956
TseI GCWGC 4 cut(s) 395, 551, 825, 921
Tsp45I GTSAC 2 cut(s) 848, 956
TspDTI ATGAA 2 cut(s) 285, 1033
TspRI CASTG 2 cut(s) 413, 724
VpaK11BI GGWCC 1 cut(s) 674
XapI RAATTY 1 cut(s) 204
XceI RCATGY 3 cut(s) 298, 465, 971
XmiI GTMKAC 1 cut(s) 802
XspI CTAG 8 cut(s) 347, 531, 669, 747, 813, 1098, 1104, 1110
Zsp2I ATGCAT 2 cut(s) 6, 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.