Rh6BG408500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000890
Physical Location & Seq
Forward (+)
63429835 .. 63430161
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG408500.1

Sequence Viewer

Length: 327 bp
ATGGAAATGACTTGGCAGAATGGGTGTAGACAGTTGAAAATAGAAATGGATTCACTTGTTGCGGTTAAATTGGTTCTCTCTCCCATTGCTCAGCTCCACCCTCTTTATAGTATTGTGGCAAGTTGTCAGGAGCTTTTGAGTAGGGATTGGAATGTGTCCCTTACCCATGTTTACAGAGAGTGTAATTCAGTGGCTGATTTGTTAGCGAATATTGGGCATGGTTATGAGCCTGGCTGCAGATTCCTTAGCGTCCCTCCTATTGATGTCGTGCCTCTTCTGGAAGCTGACCTTCTGGGCTTGTCTAAGCCAAGATTAATTGTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

108

Amino Acids

12.03

Weight (kDa)

5.46

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 1 - 70 8.2e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AciI CCGC 1 cut(s) 62
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 3 cut(s) 94, 133, 284
AluI AGCT 3 cut(s) 94, 133, 284
AlwNI CAGNNNCTG 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 234
AseI ATTAAT 1 cut(s) 314
BbvI GCAGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 1 cut(s) 235
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 245
Bpu1102I GCTNAGC 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 221
BslFI GGGAC 2 cut(s) 142, 236
BsmFI GGGAC 2 cut(s) 142, 236
Bsp1720I GCTNAGC 1 cut(s) 90
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 90, 245, 303
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 194
CseI GACGC 1 cut(s) 238
CviAII CATG 2 cut(s) 167, 218
CviJI RGCY 8 cut(s) 94, 133, 194, 229, 234, 284, 297, 307
CviKI_1 RGCY 8 cut(s) 94, 133, 194, 229, 234, 284, 297, 307
DdeI CTNAG 3 cut(s) 90, 245, 303
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 229
FaeI CATG 2 cut(s) 170, 221
FaiI YATR 4 cut(s) 108, 168, 219, 225
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 2 cut(s) 142, 236
FatI CATG 2 cut(s) 166, 217
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 235
HgaI GACGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 170, 221
HinfI GANTC 2 cut(s) 50, 240
Hpy166II GTNNAC 2 cut(s) 29, 172
Hpy188III TCNNGA 2 cut(s) 128, 278
Hpy8I GTNNAC 2 cut(s) 29, 172
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 237
HpyF3I CTNAG 3 cut(s) 90, 245, 303
Hsp92II CATG 2 cut(s) 170, 221
LmnI GCTCC 2 cut(s) 99, 130
LpnPI CCDG 5 cut(s) 113, 216, 243, 263, 278
Lsp1109I GCAGC 1 cut(s) 221
MboII GAAGA 1 cut(s) 266
MluCI AATT 3 cut(s) 68, 184, 315
MnlI CCTC 3 cut(s) 111, 264, 282
MseI TTAA 2 cut(s) 66, 314
MslI CAYNNNNRTG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
NlaIII CATG 2 cut(s) 170, 221
PfeI GAWTC 2 cut(s) 50, 240
PkrI GCNGC 1 cut(s) 236
PshBI ATTAAT 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PstI CTGCAG 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 66, 314
SatI GCNGC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 231
SetI ASST 4 cut(s) 96, 135, 286, 291
SfcI CTRYAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 3 cut(s) 68, 184, 315
SsiI CCGC 1 cut(s) 62
SspI AATATT 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 33
TasI AATT 3 cut(s) 68, 184, 315
TfiI GAWTC 2 cut(s) 50, 240
Tru1I TTAA 2 cut(s) 66, 314
Tru9I TTAA 2 cut(s) 66, 314
TscAI CASTG 1 cut(s) 195
TseI GCWGC 1 cut(s) 234
TspRI CASTG 1 cut(s) 195
VspI ATTAAT 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.