Rroxscaffold_7G00172420

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000890
Physical Location & Seq
Forward (+)
12641531 .. 12641848
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172420.1

Sequence Viewer

Length: 240 bp
ATGGAAATGGCTTGGCAGAATGGTTGTAGACATATTGTGGCAAGTTGTCAAGAGTTTTTGAGTAGGGATTGGAATGTGTCCCTCACCCATGTTTACAGAGAGTGTAATTCAGTGGCTAATTTGTTAGCAAATATTGGGCATGGTTGCTGCAGATTCTTTAGCTTCCCTCCTGCTGATGTCGTGCCTCTTTTGGAAGCTGATCTATTGGGCTTGTCTAAGCCAAGATTAATTGTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

79

Amino Acids

8.87

Weight (kDa)

6.24

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 6 - 44 1e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AluBI AGCT 2 cut(s) 162, 197
AluI AGCT 2 cut(s) 162, 197
ApeKI GCWGC 1 cut(s) 147
AseI ATTAAT 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 76
BbvI GCAGC 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 148
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
BseXI GCAGC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 199
BspMAI CTGCAG 1 cut(s) 152
BssMI GATC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 216
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 117
CviAII CATG 2 cut(s) 89, 140
CviJI RGCY 6 cut(s) 11, 116, 162, 197, 210, 220
CviKI_1 RGCY 6 cut(s) 11, 116, 162, 197, 210, 220
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
FaeI CATG 2 cut(s) 92, 143
FaiI YATR 3 cut(s) 33, 90, 141
FaqI GGGAC 1 cut(s) 64
FatI CATG 2 cut(s) 88, 139
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 148
Hin1II CATG 2 cut(s) 92, 143
HinfI GANTC 1 cut(s) 153
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 29, 94
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 2 cut(s) 29, 94
HpyCH4V TGCA 1 cut(s) 150
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 2 cut(s) 92, 143
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 1 cut(s) 183
Lsp1109I GCAGC 1 cut(s) 134
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MluCI AATT 3 cut(s) 106, 118, 228
MnlI CCTC 3 cut(s) 92, 177, 195
MseI TTAA 2 cut(s) 227, 238
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 92, 143
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 1 cut(s) 149
PshBI ATTAAT 1 cut(s) 227
PstI CTGCAG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 227, 238
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 199
SetI ASST 2 cut(s) 164, 199
SfcI CTRYAG 1 cut(s) 148
SgeI CNNG 9 cut(s) 24, 54, 62, 101, 152, 182, 193, 223, 234
Sse9I AATT 3 cut(s) 106, 118, 228
SspI AATATT 1 cut(s) 133
TasI AATT 3 cut(s) 106, 118, 228
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 227, 238
Tru9I TTAA 2 cut(s) 227, 238
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 147
TspRI CASTG 1 cut(s) 117
VspI ATTAAT 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.