RchiOBHm_Chr4g0411801

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000890
Physical Location & Seq
Reverse (-)
35636807 .. 35637329
523 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38256

Sequence Viewer

Length: 447 bp
ATGGCTCAACGTATATGGAATAAGATTATGTGCTCTGACTCAATTGCTAGGACTTGGAACCTAGATTGGAATGGCTGGTTGCATGCTAACACTCATTGCAAACTTCGTTGTTATGGTGGTCTGATGTGGGTAAATATCTTTATTTTCACATGTTGGTTTATTTGGAAATGGAGATGCAAGAGAATTTTTGATAGTGAGTTCCGGTGCCCTTTTGACCCTGTTACTGTTATTTTGGATACTGTGACTGAATGGGGTCGTGCTCATACCTGTGACACTCGTGTCACTGAAAAAGTTGCTGTGACTGTTAAATGGACTAAGCCTCCTCCTGGATGGGTGAAATTGAATGTTGATGGTGCTAGAACTCAAAATGGAAGTATTGGAGCTGGGGGGGGGGGGTTATTAGAGATTGTGATGGTAATTGGATATCTGGTTTCTCTGCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

148

Amino Acids

16.96

Weight (kDa)

9.1

Isoelectric Point (pI)

26.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 149
AgsI TTSAA 1 cut(s) 343
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
Alw21I GWGCWC 2 cut(s) 35, 262
ApoI RAATTY 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 204
BauI CACGAG 1 cut(s) 276
Bbv12I GWGCWC 2 cut(s) 35, 262
BccI CCATC 3 cut(s) 324, 344, 406
BciT130I CCWGG 1 cut(s) 327
BciVI GTATCC 1 cut(s) 229
BfaI CTAG 3 cut(s) 48, 62, 357
BfuI GTATCC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 327
BmiI GGNNCC 2 cut(s) 59, 206
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 383
BshNI GGYRCC 1 cut(s) 204
BsiHKAI GWGCWC 2 cut(s) 35, 262
BsiSI CCGG 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 35, 209, 262
BspLI GGNNCC 2 cut(s) 59, 206
BspT107I GGYRCC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 94
BssSI CACGAG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 3 cut(s) 226, 241, 304
BstC8I GCNNGC 2 cut(s) 84, 441
BstDEI CTNAG 2 cut(s) 315, 444
BstF5I GGATG 1 cut(s) 335
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 2 cut(s) 86, 153
BstSCI CCNGG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 209
BsuI GTATCC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 335
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 84, 441
CviAII CATG 2 cut(s) 83, 150
CviJI RGCY 4 cut(s) 5, 75, 319, 383
CviKI_1 RGCY 4 cut(s) 5, 75, 319, 383
DdeI CTNAG 2 cut(s) 315, 444
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eco32I GATATC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 325
EcoRV GATATC 1 cut(s) 425
FaeI CATG 2 cut(s) 86, 153
FaiI YATR 7 cut(s) 14, 16, 29, 84, 114, 151, 264
FatI CATG 2 cut(s) 82, 149
FokI GGATG 1 cut(s) 342
FspBI CTAG 3 cut(s) 48, 62, 357
GsaI CCCAGC 1 cut(s) 387
HapII CCGG 1 cut(s) 202
Hin1II CATG 2 cut(s) 86, 153
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 202
HphI GGTGA 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 37, 123
HpyCH4III ACNGT 3 cut(s) 226, 241, 304
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 82, 99, 177
HpyF3I CTNAG 2 cut(s) 315, 444
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 86, 153
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 8 cut(s) 61, 215, 231, 280, 312, 339, 369, 413
LweI GCATC 1 cut(s) 164
MaeI CTAG 3 cut(s) 48, 62, 357
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 5 cut(s) 220, 241, 269, 280, 298
MfeI CAATTG 1 cut(s) 42
MhlI GDGCHC 3 cut(s) 35, 209, 262
MluCI AATT 4 cut(s) 42, 183, 338, 417
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 2 cut(s) 330, 333
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 327
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 327
NlaIII CATG 2 cut(s) 86, 153
NlaIV GGNNCC 2 cut(s) 59, 206
NmuCI GTSAC 4 cut(s) 241, 269, 280, 298
NspI RCATGY 2 cut(s) 86, 153
PaeI GCATGC 1 cut(s) 86
PciI ACATGT 1 cut(s) 149
PfoI TCCNGGA 1 cut(s) 325
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PscI ACATGT 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 59, 206
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 306
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 3 cut(s) 35, 209, 262
SetI ASST 4 cut(s) 13, 63, 269, 385
SfaNI GCATC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 267
SphI GCATGC 1 cut(s) 86
Sse9I AATT 4 cut(s) 42, 183, 338, 417
SspMI CTAG 3 cut(s) 48, 62, 357
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 3 cut(s) 226, 241, 304
TaiI ACGT 1 cut(s) 13
TasI AATT 4 cut(s) 42, 183, 338, 417
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 4 cut(s) 241, 269, 280, 298
Tsp45I GTSAC 4 cut(s) 241, 269, 280, 298
TspRI CASTG 1 cut(s) 289
XapI RAATTY 1 cut(s) 183
XceI RCATGY 2 cut(s) 86, 153
XspI CTAG 3 cut(s) 48, 62, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.