Prupe.1G446500_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000890
Physical Location & Seq
Reverse (-)
37765980 .. 37766857
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G446500.1

Sequence Viewer

Length: 669 bp
ATGACCATGACTGCCAATTGTGATATTTGTGGTGCCCCAATGGAGAATGCAGCTCATATTGTACGGAATTGCCCAGCGACAATTTCAGTTTGGCATCAGTCCCTTATGCCTATGAATATGAGTTTGCTGCAGGCTGTTGATCTTCATACTTGGGTTGCAAAAAATTTACACAACTCTACAATTTTGACTTATGGAGTGGAGTGGTCAACCATAAAAGGTGAGGATGGACGCATTGCTGCTGGGGGTGTACTAAGAGATAGTTATGGGCAGTGGATGAGAGGCTTTGCTGTCAATCTTGGTGTAGGACAAGTCTTGGAAGCTAAGTTATGGGGCATCTATCTTGGACTGAAAATTACTTGGGATATAGGTTGCAGTGCAGTTGTGCTTGAGTATGACTCAGCGACTGCGGTACACCTGCTTAACAAAAATGTGGAAGACTTTCATCCTCTTGCTACTATGTTGTGGGGATGCCAAGCCTATATAAACAAAAACTGGGTTTGTTCTATTCATCATGTATATCGTGAATGCAACATGGTAGCAAATAAACTAGCTGAATTGAGTTCATGTCTTGGGTTGGGTCTGTCAACTTTCCATGACCCTCATGACAGTATTAGGTCCTTTCTTAGTGAGGATTTACTTGGAGTCTGTAGGCCTCGTGCCATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

223

Amino Acids

24.55

Weight (kDa)

6.17

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42905
fragaria_vesca FvH4_1g15070 FvH4_1g21661 FvH4_1g24182 FvH4_2g15861 FvH4_7g26563
prunus_persica Prupe.1G097800_v2.0.a1 Prupe.1G446500_v2.0.a1 Prupe.4G161900_v2.0.a1 Prupe.5G085900_v2.0.a1 Prupe.6G118100_v2.0.a1 Prupe.6G201000_v2.0.a1 Prupe.7G199700_v2.0.a1
pyrus_communis pycom07g22740 pycom15g37390 pycom420g00480 pycom420g00490
rosa_chinensis RchiOBHm_Chr1g0319821 RchiOBHm_Chr1g0331331 RchiOBHm_Chr2g0144631 RchiOBHm_Chr2g0146161 RchiOBHm_Chr2g0152401 RchiOBHm_Chr3g0484381 RchiOBHm_Chr3g0484471 RchiOBHm_Chr3g0494391 RchiOBHm_Chr4g0411801 RchiOBHm_Chr4g0426191 RchiOBHm_Chr5g0016411 RchiOBHm_Chr5g0074971 RchiOBHm_Chr6g0262791 RchiOBHm_Chr6g0272021 RchiOBHm_Chr7g0181271 RchiOBHm_Chr7g0224511 RchiOBHm_Chr7g0225251
rosa_laevigata RLG00000017287
rosa_multiflora Rmu_co8215414.1_g000001 Rmu_sc0001850.1_g000028 Rmu_sc0002132.1_g000045 Rmu_sc0003623.1_g000032 Rmu_sc0003826.1_g000010 Rmu_sc0004165.1_g000032 Rmu_sc0004805.1_g000052 Rmu_sc0005837.1_g000007 Rmu_sc0011261.1_g000003 Rmu_sc0012066.1_g000001 Rmu_sc0021240.1_g000002 Rmu_sc0028377.1_g000003 Rmu_ssc0000454.1_g000003
rosa_roxburghii Rroxscaffold_177G00434230 Rroxscaffold_180G00433210 Rroxscaffold_1G00050960 Rroxscaffold_2G00112540 Rroxscaffold_7G00172420
rosa_rugosa Rorug02G0446000 Rorug03G0370600 Rorug04G0217600.1 Rorug07G0160200 Rorug07G0292300.1
rosa_samantha Rh3AG161100 Rh5AG403600 Rh5CG315600 Rh5CG315800 Rh6BG408500 Rh7CG313500
rosa_wichuraiana Rw4G023910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 423
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 1 cut(s) 407
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 3 cut(s) 63, 249, 411
AluBI AGCT 3 cut(s) 53, 320, 551
AluI AGCT 3 cut(s) 53, 320, 551
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 1 cut(s) 650
ApeKI GCWGC 3 cut(s) 50, 127, 236
ApoI RAATTY 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 615
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 615
BaeGI GKGCMC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 32
BauI CACGAG 1 cut(s) 654
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 62, 114, 223
BccI CCATC 1 cut(s) 218
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 2 cut(s) 128, 646
BfuAI ACCTGC 1 cut(s) 423
BisI GCNGC 3 cut(s) 51, 128, 237
BlsI GCNGC 3 cut(s) 52, 129, 238
Bme18I GGWCC 1 cut(s) 615
BmgT120I GGNCC 1 cut(s) 615
BmiI GGNNCC 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 3 cut(s) 103, 342, 458
BmuI ACTGGG 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 441
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpuEI CTTGAG 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 497
Bse3DI GCAATG 1 cut(s) 231
BseGI GGATG 4 cut(s) 229, 279, 442, 473
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 497
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 3 cut(s) 62, 114, 223
BseYI CCCAGC 2 cut(s) 73, 239
BsgI GTGCAG 1 cut(s) 396
BshFI GGCC 1 cut(s) 652
BshNI GGYRCC 1 cut(s) 32
BslFI GGGAC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 85
BsmI GAATGC 2 cut(s) 52, 530
BsnI GGCC 1 cut(s) 652
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 1 cut(s) 407
BspANI GGCC 1 cut(s) 652
BspCNI CTCAG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 497
BssMI GATC 1 cut(s) 139
BssSI CACGAG 1 cut(s) 654
Bst2BI CACGAG 1 cut(s) 654
Bst4CI ACNGT 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 4 cut(s) 251, 321, 397, 623
BstF5I GGATG 4 cut(s) 229, 279, 442, 473
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstSFI CTRYAG 2 cut(s) 128, 646
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 3 cut(s) 62, 114, 223
BstV2I GAAGAC 1 cut(s) 441
BsuRI GGCC 1 cut(s) 652
BtsCI GGATG 4 cut(s) 229, 279, 442, 473
BtsI GCAGTG 2 cut(s) 275, 379
BtsIMutI CAGTG 2 cut(s) 275, 379
BveI ACCTGC 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 404
CciI TCATGA 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 615
CseI GACGC 1 cut(s) 237
Csp6I GTAC 3 cut(s) 62, 248, 410
CviAII CATG 6 cut(s) 7, 512, 532, 564, 593, 602
CviJI RGCY 7 cut(s) 53, 134, 282, 320, 476, 551, 652
CviKI_1 RGCY 7 cut(s) 53, 134, 282, 320, 476, 551, 652
CviQI GTAC 3 cut(s) 62, 248, 410
DdeI CTNAG 4 cut(s) 251, 321, 397, 623
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 615
FaeI CATG 6 cut(s) 10, 515, 535, 567, 596, 605
FaqI GGGAC 1 cut(s) 85
FatI CATG 6 cut(s) 6, 511, 531, 563, 592, 601
Fnu4HI GCNGC 3 cut(s) 51, 128, 237
FokI GGATG 4 cut(s) 236, 286, 429, 480
Fsp4HI GCNGC 3 cut(s) 51, 128, 237
FspBI CTAG 1 cut(s) 548
GluI GCNGC 3 cut(s) 51, 128, 237
GsaI CCCAGC 2 cut(s) 77, 243
HaeIII GGCC 1 cut(s) 652
HgaI GACGC 1 cut(s) 237
Hin1II CATG 6 cut(s) 10, 515, 535, 567, 596, 605
HincII GTYRAC 2 cut(s) 207, 585
HindII GTYRAC 2 cut(s) 207, 585
HinfI GANTC 2 cut(s) 395, 642
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 4 cut(s) 207, 248, 412, 585
Hpy188III TCNNGA 2 cut(s) 521, 602
Hpy8I GTNNAC 4 cut(s) 207, 248, 412, 585
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4V TGCA 6 cut(s) 50, 130, 158, 372, 377, 528
HpyF3I CTNAG 4 cut(s) 251, 321, 397, 623
Hsp92II CATG 6 cut(s) 10, 515, 535, 567, 596, 605
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 5 cut(s) 87, 116, 225, 428, 478
Lsp1109I GCAGC 3 cut(s) 62, 114, 223
LweI GCATC 3 cut(s) 103, 342, 458
MaeI CTAG 1 cut(s) 548
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 134, 446
MfeI CAATTG 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 7 cut(s) 16, 67, 81, 163, 180, 351, 554
MlyI GAGTC 2 cut(s) 389, 651
MnlI CCTC 6 cut(s) 214, 272, 456, 609, 622, 663
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 2 cut(s) 420, 667
MunI CAATTG 1 cut(s) 16
Mva1269I GAATGC 2 cut(s) 52, 530
NdeII GATC 1 cut(s) 139
NlaIII CATG 6 cut(s) 10, 515, 535, 567, 596, 605
NlaIV GGNNCC 1 cut(s) 34
PagI TCATGA 1 cut(s) 601
PaqCI CACCTGC 1 cut(s) 423
PceI AGGCCT 1 cut(s) 652
PctI GAATGC 2 cut(s) 52, 530
PdmI GAANNNNTTC 1 cut(s) 438
PkrI GCNGC 3 cut(s) 52, 129, 238
PleI GAGTC 2 cut(s) 389, 650
PpsI GAGTC 2 cut(s) 389, 650
PpuMI RGGWCCY 1 cut(s) 615
Psp5II RGGWCCY 1 cut(s) 615
PspFI CCCAGC 2 cut(s) 73, 239
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 615
PspPPI RGGWCCY 1 cut(s) 615
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 404
RsaI GTAC 3 cut(s) 63, 249, 411
RsaNI GTAC 3 cut(s) 62, 248, 410
SaqAI TTAA 2 cut(s) 420, 667
SatI GCNGC 3 cut(s) 51, 128, 237
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 615
SchI GAGTC 2 cut(s) 389, 651
SduI GDGCHC 1 cut(s) 37
SetI ASST 7 cut(s) 55, 220, 322, 370, 417, 553, 617
SfaNI GCATC 3 cut(s) 103, 342, 458
SfcI CTRYAG 2 cut(s) 128, 646
SinI GGWCC 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 7 cut(s) 16, 67, 81, 163, 180, 351, 554
SseBI AGGCCT 1 cut(s) 652
SsiI CCGC 1 cut(s) 407
SspMI CTAG 1 cut(s) 548
StuI AGGCCT 1 cut(s) 652
TaaI ACNGT 1 cut(s) 608
TasI AATT 7 cut(s) 16, 67, 81, 163, 180, 351, 554
TatI WGTACW 1 cut(s) 247
Tru1I TTAA 2 cut(s) 420, 667
Tru9I TTAA 2 cut(s) 420, 667
TscAI CASTG 2 cut(s) 275, 379
TseI GCWGC 3 cut(s) 50, 127, 236
TspDTI ATGAA 5 cut(s) 128, 134, 431, 497, 552
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 2 cut(s) 275, 379
VpaK11BI GGWCC 1 cut(s) 615
XapI RAATTY 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.